miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 624 0.66 0.406551
Target:  5'- -cGCGcCGGGaucggauCGCCGccCGUCAUCGCCu -3'
miRNA:   3'- caUGC-GCCC-------GCGGCu-GUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 647 0.73 0.120452
Target:  5'- -cGCGCGGcgaGCGCaCGcGCAUgACCGCCGa -3'
miRNA:   3'- caUGCGCC---CGCG-GC-UGUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 901 0.67 0.331084
Target:  5'- -cGCGCGGcGUGCCGAgCAgCGCauaGCCc -3'
miRNA:   3'- caUGCGCC-CGCGGCU-GUaGUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 1438 0.68 0.284205
Target:  5'- gGUGCGCGcgcgguagcccuucGGCgGCuCGuCGUCACCGUCGc -3'
miRNA:   3'- -CAUGCGC--------------CCG-CG-GCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1588 0.68 0.265779
Target:  5'- gGUGgGUGGGUGgCGGCcUCgaACCGCCa -3'
miRNA:   3'- -CAUgCGCCCGCgGCUGuAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 1596 0.66 0.355329
Target:  5'- -cGCGCGGcGCGCCaACGgcgAUCGCCu -3'
miRNA:   3'- caUGCGCC-CGCGGcUGUag-UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 1624 0.71 0.175834
Target:  5'- -gACGCGGGCGgCGACcUCGaaGUCGu -3'
miRNA:   3'- caUGCGCCCGCgGCUGuAGUggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1806 0.76 0.07297
Target:  5'- cGUGCGCGaGCGCCaGACcgucGUCGCUGCCGc -3'
miRNA:   3'- -CAUGCGCcCGCGG-CUG----UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2212 0.66 0.363684
Target:  5'- -aGCGCGGcGCGCa-GCGcgCACCGCaCGc -3'
miRNA:   3'- caUGCGCC-CGCGgcUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 2885 0.66 0.355329
Target:  5'- -cGCGCaGGCGaCGACGgacacgUCGgCCGCCGc -3'
miRNA:   3'- caUGCGcCCGCgGCUGU------AGU-GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2937 0.7 0.195402
Target:  5'- cUGCGCaaGCGCCG-CggCACCGCCGc -3'
miRNA:   3'- cAUGCGccCGCGGCuGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2952 0.68 0.300686
Target:  5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3'
miRNA:   3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4291 0.66 0.372174
Target:  5'- -cGCGCGaG-GUCGACAUCcUCGCCGa -3'
miRNA:   3'- caUGCGCcCgCGGCUGUAGuGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4624 0.67 0.308078
Target:  5'- --cCGC-GGCGCCGG--UgGCCGCCGg -3'
miRNA:   3'- cauGCGcCCGCGGCUguAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4773 0.67 0.345483
Target:  5'- -aGCGCGGGaagcugacgccaGCCGGCGagGCCGUg- -3'
miRNA:   3'- caUGCGCCCg-----------CGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6037 0.69 0.234227
Target:  5'- aGUGCGC-GGCGUCGAC--CGCCGCg- -3'
miRNA:   3'- -CAUGCGcCCGCGGCUGuaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6176 0.67 0.315609
Target:  5'- -aGCGCcucgacccgaacGGGaagGUCGACAUCAUCGUCGa -3'
miRNA:   3'- caUGCG------------CCCg--CGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6318 0.68 0.286314
Target:  5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3'
miRNA:   3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6388 0.66 0.395762
Target:  5'- -aACGCGGggcgaagggcacgaGCGacugCGugAUCAUCGCCGu -3'
miRNA:   3'- caUGCGCC--------------CGCg---GCugUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.