miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 11400 1.09 0.000251
Target:  5'- cGUACGCGGGCGCCGACAUCACCGCCGa -3'
miRNA:   3'- -CAUGCGCCCGCGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17965 0.81 0.033783
Target:  5'- aUGCGCGGGCucGCCGGCAUCgGCCGCa- -3'
miRNA:   3'- cAUGCGCCCG--CGGCUGUAG-UGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 23725 0.79 0.047663
Target:  5'- -aGCaGCGGGcCGCCGAUcgCGCUGCCGa -3'
miRNA:   3'- caUG-CGCCC-GCGGCUGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18144 0.78 0.059861
Target:  5'- -aGCGCGGGcCGCCGACGUCgu-GCCGa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUAGuggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1806 0.76 0.07297
Target:  5'- cGUGCGCGaGCGCCaGACcgucGUCGCUGCCGc -3'
miRNA:   3'- -CAUGCGCcCGCGG-CUG----UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25514 0.76 0.077196
Target:  5'- -cGCgGCGGGUGgCGGCAuaaucgUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCGCgGCUGU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36532 0.74 0.104943
Target:  5'- --uCGCGacccGCGCCGACucgAUCGCCGCCGu -3'
miRNA:   3'- cauGCGCc---CGCGGCUG---UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6882 0.74 0.116867
Target:  5'- -cGCGCaGGCGCUGAucaaguacaugauCAUgGCCGCCGa -3'
miRNA:   3'- caUGCGcCCGCGGCU-------------GUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 647 0.73 0.120452
Target:  5'- -cGCGCGGcgaGCGCaCGcGCAUgACCGCCGa -3'
miRNA:   3'- caUGCGCC---CGCG-GC-UGUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 29979 0.73 0.138072
Target:  5'- uUGCGCGGuGCugcucggccuGCC-ACGUCACCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----------CGGcUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 26502 0.72 0.141869
Target:  5'- -cGCGCGGGCGUuucccuCGAUcgCGCCGCg- -3'
miRNA:   3'- caUGCGCCCGCG------GCUGuaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 16276 0.72 0.141869
Target:  5'- -cGCGCGGGcCGCUGACG-CGCUGaCCa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUaGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 23550 0.72 0.145761
Target:  5'- cGUACGCuGaCGCCGcccGCAUCGCCgGCCGg -3'
miRNA:   3'- -CAUGCGcCcGCGGC---UGUAGUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 28546 0.72 0.158029
Target:  5'- -cGCGcCGGGCuGCUgaauuuguaGGCGUCGCCGCCc -3'
miRNA:   3'- caUGC-GCCCG-CGG---------CUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 10371 0.72 0.158029
Target:  5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3'
miRNA:   3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40869 0.71 0.166718
Target:  5'- -cGCGCGaGCGCCG-CA-CGCCGUCGg -3'
miRNA:   3'- caUGCGCcCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36914 0.71 0.171222
Target:  5'- aGUGCcaGCGGGCG-CGugGUCG-CGCCGg -3'
miRNA:   3'- -CAUG--CGCCCGCgGCugUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1624 0.71 0.175834
Target:  5'- -gACGCGGGCGgCGACcUCGaaGUCGu -3'
miRNA:   3'- caUGCGCCCGCgGCUGuAGUggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25045 0.71 0.180556
Target:  5'- -cACGCGGuGCGCCGaaccgGCGUUugCGCgCGc -3'
miRNA:   3'- caUGCGCC-CGCGGC-----UGUAGugGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 7296 0.71 0.18539
Target:  5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.