miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 14011 0.69 0.240276
Target:  5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3'
miRNA:   3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2937 0.7 0.195402
Target:  5'- cUGCGCaaGCGCCG-CggCACCGCCGc -3'
miRNA:   3'- cAUGCGccCGCGGCuGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 15930 0.7 0.200583
Target:  5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 14765 0.7 0.216847
Target:  5'- -aACGCGGGUuacgaccaccucGCCGACcagAUCAacCCGCUGg -3'
miRNA:   3'- caUGCGCCCG------------CGGCUG---UAGU--GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13621 0.7 0.216847
Target:  5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3'
miRNA:   3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 39835 0.7 0.220801
Target:  5'- -cGCGaCGGGcCGCCGucGCAcaucaaucgaccgcUCACCGCUGa -3'
miRNA:   3'- caUGC-GCCC-GCGGC--UGU--------------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19822 0.7 0.222514
Target:  5'- -aACGgGGGCGUCGACGacaCACUGgCGa -3'
miRNA:   3'- caUGCgCCCGCGGCUGUa--GUGGCgGC- -5'
28069 3' -60.6 NC_005887.1 + 32741 0.7 0.222514
Target:  5'- -aGCGCGGcgcucgcgugcGCGCCGGCGcgCGCCaugcaGCCGg -3'
miRNA:   3'- caUGCGCC-----------CGCGGCUGUa-GUGG-----CGGC- -5'
28069 3' -60.6 NC_005887.1 + 12554 0.71 0.190338
Target:  5'- -gACGU-GGCGUCGACG--GCCGCCGg -3'
miRNA:   3'- caUGCGcCCGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 26833 0.71 0.18539
Target:  5'- cGUGCgcgaGCGGGCgcgucuGCCGGuagcCGUUGCCGCCGg -3'
miRNA:   3'- -CAUG----CGCCCG------CGGCU----GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 11386 0.71 0.18539
Target:  5'- -aGCGCagccGGaGCGCUGGCGgccggCGCCGCCa -3'
miRNA:   3'- caUGCG----CC-CGCGGCUGUa----GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 18144 0.78 0.059861
Target:  5'- -aGCGCGGGcCGCCGACGUCgu-GCCGa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUAGuggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25514 0.76 0.077196
Target:  5'- -cGCgGCGGGUGgCGGCAuaaucgUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCGCgGCUGU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6882 0.74 0.116867
Target:  5'- -cGCGCaGGCGCUGAucaaguacaugauCAUgGCCGCCGa -3'
miRNA:   3'- caUGCGcCCGCGGCU-------------GUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 647 0.73 0.120452
Target:  5'- -cGCGCGGcgaGCGCaCGcGCAUgACCGCCGa -3'
miRNA:   3'- caUGCGCC---CGCG-GC-UGUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 23550 0.72 0.145761
Target:  5'- cGUACGCuGaCGCCGcccGCAUCGCCgGCCGg -3'
miRNA:   3'- -CAUGCGcCcGCGGC---UGUAGUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 10371 0.72 0.158029
Target:  5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3'
miRNA:   3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28546 0.72 0.158029
Target:  5'- -cGCGcCGGGCuGCUgaauuuguaGGCGUCGCCGCCc -3'
miRNA:   3'- caUGC-GCCCG-CGG---------CUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 7296 0.71 0.18539
Target:  5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.