miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 36981 0.66 0.388673
Target:  5'- -cGCGCGGGUcgagcucGCCGGCGagcacgCGCagGCCGu -3'
miRNA:   3'- caUGCGCCCG-------CGGCUGUa-----GUGg-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 9099 0.66 0.407458
Target:  5'- -aGCGCGGGCaCCGGC---GCCGUUa -3'
miRNA:   3'- caUGCGCCCGcGGCUGuagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 26220 0.66 0.406551
Target:  5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3'
miRNA:   3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5'
28069 3' -60.6 NC_005887.1 + 9060 0.66 0.407458
Target:  5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3'
miRNA:   3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5'
28069 3' -60.6 NC_005887.1 + 12075 0.66 0.407458
Target:  5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3'
miRNA:   3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5'
28069 3' -60.6 NC_005887.1 + 16458 0.66 0.389554
Target:  5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3'
miRNA:   3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5'
28069 3' -60.6 NC_005887.1 + 25006 0.66 0.380798
Target:  5'- -aGCGUcagcucGCGCCGGCG--GCCGCCGg -3'
miRNA:   3'- caUGCGcc----CGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28191 0.66 0.407458
Target:  5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3'
miRNA:   3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 32299 0.66 0.389554
Target:  5'- --uCGuCGGGCcaGCCGGCG-CGCCGCa- -3'
miRNA:   3'- cauGC-GCCCG--CGGCUGUaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 13399 0.66 0.380798
Target:  5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3'
miRNA:   3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 10095 0.66 0.355329
Target:  5'- uGUGgGCGGcccGCGCCGACG--GCCaGCUGa -3'
miRNA:   3'- -CAUgCGCC---CGCGGCUGUagUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 41285 0.66 0.398442
Target:  5'- cUGCGCacGGGCGCgCuGCu--GCCGCCGg -3'
miRNA:   3'- cAUGCG--CCCGCG-GcUGuagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4291 0.66 0.372174
Target:  5'- -cGCGCGaG-GUCGACAUCcUCGCCGa -3'
miRNA:   3'- caUGCGCcCgCGGCUGUAGuGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40176 0.66 0.363684
Target:  5'- cUGCGCGacGGCa-CGAagggaAUCGCCGCCGg -3'
miRNA:   3'- cAUGCGC--CCGcgGCUg----UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2885 0.66 0.355329
Target:  5'- -cGCGCaGGCGaCGACGgacacgUCGgCCGCCGc -3'
miRNA:   3'- caUGCGcCCGCgGCUGU------AGU-GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 31509 0.66 0.380798
Target:  5'- -cGCGCGcGGCGCgGAUgaacgcaguuGUCGCuuCGCCa -3'
miRNA:   3'- caUGCGC-CCGCGgCUG----------UAGUG--GCGGc -5'
28069 3' -60.6 NC_005887.1 + 8410 0.66 0.380798
Target:  5'- -cGCGUGGGCcgaGCaCGACcaggcuAUCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG---CG-GCUG------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 36631 0.66 0.380798
Target:  5'- -cGCGCGccuucuccuGcGCGUCGugGUCugCGCCc -3'
miRNA:   3'- caUGCGC---------C-CGCGGCugUAGugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 8844 0.66 0.372174
Target:  5'- --uCGCGGGCagcuugugaacGCCGGCG-CGCCcGUCGa -3'
miRNA:   3'- cauGCGCCCG-----------CGGCUGUaGUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.