miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 23234 0.69 0.767568
Target:  5'- gACgGCAcGCGAGcggcggCGGUCgGCGCGCa -3'
miRNA:   3'- aUGaUGU-UGCUCua----GCUAGgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 3779 0.69 0.767568
Target:  5'- gGCU-CGACGAGGgccgCGA-CCGCAuCGUg -3'
miRNA:   3'- aUGAuGUUGCUCUa---GCUaGGCGU-GCG- -5'
28074 3' -50.3 NC_005887.1 + 6441 0.69 0.767568
Target:  5'- gGCcGCGcCGAGAUCGAagUGCGCGa -3'
miRNA:   3'- aUGaUGUuGCUCUAGCUagGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 5040 0.69 0.756802
Target:  5'- cUGCUGCGACGAccgaAUCGAaaCCGUcugGCGCg -3'
miRNA:   3'- -AUGAUGUUGCUc---UAGCUa-GGCG---UGCG- -5'
28074 3' -50.3 NC_005887.1 + 7779 0.69 0.756802
Target:  5'- cUGCUACGugaacGCGAcGAUCGAcaUCUaCGCGCa -3'
miRNA:   3'- -AUGAUGU-----UGCU-CUAGCU--AGGcGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 16926 0.69 0.756802
Target:  5'- gGCaagACGACGGGcgCGAUgCGUgaGCGCu -3'
miRNA:   3'- aUGa--UGUUGCUCuaGCUAgGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 8868 0.69 0.756802
Target:  5'- cGCgccCGuCGAGAUCGcgacgCCGUACGCg -3'
miRNA:   3'- aUGau-GUuGCUCUAGCua---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 26151 0.69 0.756802
Target:  5'- cGCUcgACGACGuccucGUCGAUCguguCGCGCGCg -3'
miRNA:   3'- aUGA--UGUUGCuc---UAGCUAG----GCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 4233 0.69 0.745894
Target:  5'- gUGCUGCucGCGccGAcgcUCGG-CCGCACGCa -3'
miRNA:   3'- -AUGAUGu-UGCu-CU---AGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 39909 0.69 0.745894
Target:  5'- aGCaUACGgugcGCGcAGAUCGAgCCGgGCGCg -3'
miRNA:   3'- aUG-AUGU----UGC-UCUAGCUaGGCgUGCG- -5'
28074 3' -50.3 NC_005887.1 + 617 0.69 0.744796
Target:  5'- uUGCUGCAA--AGAUCGAagCCGCgaugaaaGCGCg -3'
miRNA:   3'- -AUGAUGUUgcUCUAGCUa-GGCG-------UGCG- -5'
28074 3' -50.3 NC_005887.1 + 32647 0.69 0.723709
Target:  5'- cUGCUGCAcgaucGCuGAGucAUCGGUCUGCugGUc -3'
miRNA:   3'- -AUGAUGU-----UG-CUC--UAGCUAGGCGugCG- -5'
28074 3' -50.3 NC_005887.1 + 11662 0.69 0.723709
Target:  5'- -cCUGCucgccgaguACGAGGUCGAUCUGCcCGa -3'
miRNA:   3'- auGAUGu--------UGCUCUAGCUAGGCGuGCg -5'
28074 3' -50.3 NC_005887.1 + 3701 0.7 0.712458
Target:  5'- -uCUACcACGccGUCGAgCCGCGCGCc -3'
miRNA:   3'- auGAUGuUGCucUAGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 30774 0.7 0.712458
Target:  5'- gUGCgcGCGGCGAGuUCcuUCUGCGCGCg -3'
miRNA:   3'- -AUGa-UGUUGCUCuAGcuAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 26788 0.7 0.70112
Target:  5'- ---aGCGAauCGAGcgCGGUCgCGCGCGCc -3'
miRNA:   3'- augaUGUU--GCUCuaGCUAG-GCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 40129 0.7 0.70112
Target:  5'- -cCUACAGCGugcGGUgCGcgCUGCGCGCc -3'
miRNA:   3'- auGAUGUUGCu--CUA-GCuaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 16988 0.7 0.70112
Target:  5'- gACUACGGCuacgugcCGAUCCGcCACGCg -3'
miRNA:   3'- aUGAUGUUGcucua--GCUAGGC-GUGCG- -5'
28074 3' -50.3 NC_005887.1 + 4761 0.7 0.689707
Target:  5'- cACU--GACGAGAUcCGAauUCCGC-CGCg -3'
miRNA:   3'- aUGAugUUGCUCUA-GCU--AGGCGuGCG- -5'
28074 3' -50.3 NC_005887.1 + 15311 0.7 0.689707
Target:  5'- gGCgGCAGCGuGcgCGGUC-GCGCGCu -3'
miRNA:   3'- aUGaUGUUGCuCuaGCUAGgCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.