miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 12601 0.67 0.413386
Target:  5'- gGC-CGCGACGCuCGGcGuGCUGaCGCAg -3'
miRNA:   3'- gUGcGCGCUGUG-GCCaCuCGAC-GUGU- -5'
28075 3' -58.5 NC_005887.1 + 12644 0.73 0.152692
Target:  5'- uGCGaCGCGACGgCGaGUG-GCUGCGCGu -3'
miRNA:   3'- gUGC-GCGCUGUgGC-CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 12706 0.68 0.368175
Target:  5'- uCACGCGCGcACGCUGGUcGcGCaGCAgCAg -3'
miRNA:   3'- -GUGCGCGC-UGUGGCCA-CuCGaCGU-GU- -5'
28075 3' -58.5 NC_005887.1 + 13170 0.68 0.359549
Target:  5'- gCGCGCGCaGACAgCGG-GAGCgGUcgaGCAg -3'
miRNA:   3'- -GUGCGCG-CUGUgGCCaCUCGaCG---UGU- -5'
28075 3' -58.5 NC_005887.1 + 13626 0.66 0.471913
Target:  5'- gGCGCGCGGCgGCCGcacucagccGAGCaGCACc -3'
miRNA:   3'- gUGCGCGCUG-UGGCca-------CUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 14153 0.71 0.205795
Target:  5'- gACGCGCGGCGCUGaUGcGGC-GCACAg -3'
miRNA:   3'- gUGCGCGCUGUGGCcAC-UCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 15695 0.67 0.383161
Target:  5'- -cCGCGCGGCcggaugauuccgccGCCGGcgugaagGAGCUGaCGCGc -3'
miRNA:   3'- guGCGCGCUG--------------UGGCCa------CUCGAC-GUGU- -5'
28075 3' -58.5 NC_005887.1 + 16477 0.71 0.22283
Target:  5'- -cCGCGCGGCAggauCCGGcGGGCUGguCGg -3'
miRNA:   3'- guGCGCGCUGU----GGCCaCUCGACguGU- -5'
28075 3' -58.5 NC_005887.1 + 16531 0.67 0.374297
Target:  5'- -cCGC-CGGCGCCGaGUGGGCgcgucagcaacucgUGCACGa -3'
miRNA:   3'- guGCGcGCUGUGGC-CACUCG--------------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 16697 0.67 0.404072
Target:  5'- aCGCGCuGCGGCuggCGGUGAaGCucaaccUGCACAu -3'
miRNA:   3'- -GUGCG-CGCUGug-GCCACU-CG------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 17295 0.75 0.109195
Target:  5'- cCGCGCGCGcaaACGCCGGUucggcgcaccgcGuGCUGCACu -3'
miRNA:   3'- -GUGCGCGC---UGUGGCCA------------CuCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 18535 0.67 0.42283
Target:  5'- aCACGgGCGuucUCGGUGGGCggcgGCGCc -3'
miRNA:   3'- -GUGCgCGCuguGGCCACUCGa---CGUGu -5'
28075 3' -58.5 NC_005887.1 + 19072 0.68 0.342725
Target:  5'- gGCGCG-GGCugCGGcaaccgccacGAGCUGCGCc -3'
miRNA:   3'- gUGCGCgCUGugGCCa---------CUCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 22659 0.66 0.451922
Target:  5'- gGCGCGCauuGAUauugcaucgGCCGGUGGGC-GCAa- -3'
miRNA:   3'- gUGCGCG---CUG---------UGGCCACUCGaCGUgu -5'
28075 3' -58.5 NC_005887.1 + 23238 0.68 0.334528
Target:  5'- gCACGCgaGCGGCGgCGGUcGGC-GCGCAa -3'
miRNA:   3'- -GUGCG--CGCUGUgGCCAcUCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 24380 0.66 0.432403
Target:  5'- --gGUGCGGCcgauGCCGGcGAGCccGCGCAu -3'
miRNA:   3'- gugCGCGCUG----UGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 25070 0.67 0.376941
Target:  5'- gCGCGCGCGGCGCCGcccGAcgucucGCccgGCACGa -3'
miRNA:   3'- -GUGCGCGCUGUGGCca-CU------CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26199 0.68 0.359549
Target:  5'- uCGCGCacucgGCG-CGCCGGUGguuggcgggguGGUUGCGCGc -3'
miRNA:   3'- -GUGCG-----CGCuGUGGCCAC-----------UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26673 0.7 0.267254
Target:  5'- -cCGCGCGGCggugaGCUGGUcGAGCUcgGCGCGc -3'
miRNA:   3'- guGCGCGCUG-----UGGCCA-CUCGA--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26748 0.71 0.205795
Target:  5'- -cUGCGCGACGCCcGUGcGCUGCGu- -3'
miRNA:   3'- guGCGCGCUGUGGcCACuCGACGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.