miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 321 0.67 0.42283
Target:  5'- uGCGCGCGuACACCGaG-GAagUGCGCGa -3'
miRNA:   3'- gUGCGCGC-UGUGGC-CaCUcgACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 416 0.66 0.442102
Target:  5'- gACGCGCcGCGCCGcccgcUGuuGCUGCGCu -3'
miRNA:   3'- gUGCGCGcUGUGGCc----ACu-CGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 1494 0.77 0.082112
Target:  5'- aCGCGCGCGGCggcuucGCCGGUGGauccGaCUGCACGa -3'
miRNA:   3'- -GUGCGCGCUG------UGGCCACU----C-GACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 1985 0.71 0.234842
Target:  5'- uCGCGCGCGACGgCGGcacGGCcGCGCu -3'
miRNA:   3'- -GUGCGCGCUGUgGCCac-UCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 2700 0.67 0.413386
Target:  5'- gUACGgGCGGCAagCGGccGAGCcGCGCGa -3'
miRNA:   3'- -GUGCgCGCUGUg-GCCa-CUCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 2914 0.66 0.461861
Target:  5'- -cCGCGaaCGACGCCGccgccaAGCUGCGCAa -3'
miRNA:   3'- guGCGC--GCUGUGGCcac---UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 4148 0.75 0.113599
Target:  5'- uGCGCGCGACuggcucggguauugaGCCGGccauGCUGCACAc -3'
miRNA:   3'- gUGCGCGCUG---------------UGGCCacu-CGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 4621 0.75 0.125697
Target:  5'- uCGC-CGCGGCGCCGGUGGccGCcgGCGCGa -3'
miRNA:   3'- -GUGcGCGCUGUGGCCACU--CGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 5361 0.7 0.247393
Target:  5'- uGCGCGUGcuCGCCGGcGAGCUcgacccGCGCGa -3'
miRNA:   3'- gUGCGCGCu-GUGGCCaCUCGA------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 5396 0.67 0.376941
Target:  5'- --aGCGCGACcggugaACCGGcGGGCgGCGCc -3'
miRNA:   3'- gugCGCGCUG------UGGCCaCUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 6319 0.68 0.368174
Target:  5'- uGCGCcucgcCGGCGCCgaGGUGAcGCUGCugGu -3'
miRNA:   3'- gUGCGc----GCUGUGG--CCACU-CGACGugU- -5'
28075 3' -58.5 NC_005887.1 + 6962 0.68 0.359549
Target:  5'- gCGCGgGCG-CAUCGaGcaUGAGCUGUGCAg -3'
miRNA:   3'- -GUGCgCGCuGUGGC-C--ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 7596 0.67 0.42283
Target:  5'- uCGCGUaaGCGGCGCCGGUugaucgauGGGCgGCGa- -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCA--------CUCGaCGUgu -5'
28075 3' -58.5 NC_005887.1 + 9652 0.66 0.442102
Target:  5'- -cCGCGCGGCuauCC-GUGcGCUGUACGc -3'
miRNA:   3'- guGCGCGCUGu--GGcCACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9693 1.07 0.000425
Target:  5'- gCACGCGCGACACCGGUGAGCUGCACAc -3'
miRNA:   3'- -GUGCGCGCUGUGGCCACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9795 0.69 0.318568
Target:  5'- aCugGCGCGAgaACgCGGUGAaaGCcugGCACAc -3'
miRNA:   3'- -GugCGCGCUg-UG-GCCACU--CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 10860 0.7 0.253874
Target:  5'- gCGCGCGCGGCaAUCGGUGAcuacgaacuguGCUG-ACGa -3'
miRNA:   3'- -GUGCGCGCUG-UGGCCACU-----------CGACgUGU- -5'
28075 3' -58.5 NC_005887.1 + 11056 0.66 0.442102
Target:  5'- uGCGC-CGAUGCCGGUcGAGCUcgACGa -3'
miRNA:   3'- gUGCGcGCUGUGGCCA-CUCGAcgUGU- -5'
28075 3' -58.5 NC_005887.1 + 11193 0.68 0.359549
Target:  5'- --gGCGCGACACgaUGGUGcaGGCguaUGCGCAc -3'
miRNA:   3'- gugCGCGCUGUG--GCCAC--UCG---ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11607 0.68 0.359549
Target:  5'- gGCGCuCGACACgcaGGUgcaGAGCgUGCGCAa -3'
miRNA:   3'- gUGCGcGCUGUGg--CCA---CUCG-ACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.