miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 9693 1.07 0.000425
Target:  5'- gCACGCGCGACACCGGUGAGCUGCACAc -3'
miRNA:   3'- -GUGCGCGCUGUGGCCACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 31785 0.79 0.056376
Target:  5'- uGCGCugucccguuuGCGGCGCCGGcguUGAGCUGCAUAg -3'
miRNA:   3'- gUGCG----------CGCUGUGGCC---ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 1494 0.77 0.082112
Target:  5'- aCGCGCGCGGCggcuucGCCGGUGGauccGaCUGCACGa -3'
miRNA:   3'- -GUGCGCGCUG------UGGCCACU----C-GACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40151 0.76 0.094742
Target:  5'- gCGCGcCGCGcuCGCCGcguGUGAGCUGCGCGa -3'
miRNA:   3'- -GUGC-GCGCu-GUGGC---CACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 17295 0.75 0.109195
Target:  5'- cCGCGCGCGcaaACGCCGGUucggcgcaccgcGuGCUGCACu -3'
miRNA:   3'- -GUGCGCGC---UGUGGCCA------------CuCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 4148 0.75 0.113599
Target:  5'- uGCGCGCGACuggcucggguauugaGCCGGccauGCUGCACAc -3'
miRNA:   3'- gUGCGCGCUG---------------UGGCCacu-CGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 4621 0.75 0.125697
Target:  5'- uCGC-CGCGGCGCCGGUGGccGCcgGCGCGa -3'
miRNA:   3'- -GUGcGCGCUGUGGCCACU--CGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 12644 0.73 0.152692
Target:  5'- uGCGaCGCGACGgCGaGUG-GCUGCGCGu -3'
miRNA:   3'- gUGC-GCGCUGUgGC-CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35258 0.72 0.18187
Target:  5'- cCACGCGCGauuccguguucaggaGCGCguCGGUGcGCUGCACc -3'
miRNA:   3'- -GUGCGCGC---------------UGUG--GCCACuCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 26748 0.71 0.205795
Target:  5'- -cUGCGCGACGCCcGUGcGCUGCGu- -3'
miRNA:   3'- guGCGCGCUGUGGcCACuCGACGUgu -5'
28075 3' -58.5 NC_005887.1 + 14153 0.71 0.205795
Target:  5'- gACGCGCGGCGCUGaUGcGGC-GCACAg -3'
miRNA:   3'- gUGCGCGCUGUGGCcAC-UCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 16477 0.71 0.22283
Target:  5'- -cCGCGCGGCAggauCCGGcGGGCUGguCGg -3'
miRNA:   3'- guGCGCGCUGU----GGCCaCUCGACguGU- -5'
28075 3' -58.5 NC_005887.1 + 1985 0.71 0.234842
Target:  5'- uCGCGCGCGACGgCGGcacGGCcGCGCu -3'
miRNA:   3'- -GUGCGCGCUGUgGCCac-UCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 5361 0.7 0.247393
Target:  5'- uGCGCGUGcuCGCCGGcGAGCUcgacccGCGCGa -3'
miRNA:   3'- gUGCGCGCu-GUGGCCaCUCGA------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 10860 0.7 0.253874
Target:  5'- gCGCGCGCGGCaAUCGGUGAcuacgaacuguGCUG-ACGa -3'
miRNA:   3'- -GUGCGCGCUG-UGGCCACU-----------CGACgUGU- -5'
28075 3' -58.5 NC_005887.1 + 26673 0.7 0.267254
Target:  5'- -cCGCGCGGCggugaGCUGGUcGAGCUcgGCGCGc -3'
miRNA:   3'- guGCGCGCUG-----UGGCCA-CUCGA--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 29657 0.69 0.288384
Target:  5'- uCACGCGCGGCGCgaGGUagcacAGCUGgCGCu -3'
miRNA:   3'- -GUGCGCGCUGUGg-CCAc----UCGAC-GUGu -5'
28075 3' -58.5 NC_005887.1 + 36924 0.69 0.310805
Target:  5'- gGCGCGUGgucGCGCCGGUc-GCUGCGg- -3'
miRNA:   3'- gUGCGCGC---UGUGGCCAcuCGACGUgu -5'
28075 3' -58.5 NC_005887.1 + 9795 0.69 0.318568
Target:  5'- aCugGCGCGAgaACgCGGUGAaaGCcugGCACAc -3'
miRNA:   3'- -GugCGCGCUg-UG-GCCACU--CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 37694 0.68 0.334528
Target:  5'- gCAUGCaaGCGACGCCGG-GGGCgaucagguucaGCGCGu -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCaCUCGa----------CGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.