miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 38116 0.67 0.65868
Target:  5'- cGGCCGa-GCGucgGCGCGAgcAGCACg- -3'
miRNA:   3'- -CCGGCgaUGCuuaCGUGCU--UCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 17193 0.67 0.65868
Target:  5'- cGGCCGC-ACGcg-GCaAUGuuGCGCCGc -3'
miRNA:   3'- -CCGGCGaUGCuuaCG-UGCuuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 26456 0.67 0.65868
Target:  5'- cGGCCaGCUGCGc--GU-CGAGcGCACCGa -3'
miRNA:   3'- -CCGG-CGAUGCuuaCGuGCUU-CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 21028 0.67 0.65868
Target:  5'- cGGCCGaUGCGGucgGCGCGGugGGCGugcCCGu -3'
miRNA:   3'- -CCGGCgAUGCUua-CGUGCU--UCGU---GGC- -5'
28076 5' -53.8 NC_005887.1 + 27665 0.67 0.65868
Target:  5'- cGCCGCgACGAGcccgaucGUGCGggGCAgCGu -3'
miRNA:   3'- cCGGCGaUGCUUa------CGUGCuuCGUgGC- -5'
28076 5' -53.8 NC_005887.1 + 23610 0.67 0.657554
Target:  5'- uGGCgUGUU-CGAcUGCGCGAucuucagcaagucGGCGCCGa -3'
miRNA:   3'- -CCG-GCGAuGCUuACGUGCU-------------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 27568 0.67 0.647411
Target:  5'- aGCaCGCaGCGGAaguacaGCGCGAGcGCGCCGu -3'
miRNA:   3'- cCG-GCGaUGCUUa-----CGUGCUU-CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 29186 0.67 0.647411
Target:  5'- --gCGCUGCGAGgaucUGCGCGGccuuaAGCugCGc -3'
miRNA:   3'- ccgGCGAUGCUU----ACGUGCU-----UCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 633 0.67 0.647411
Target:  5'- aGCCGCgAUGAAaGCGCGcggcGAGCGCaCGc -3'
miRNA:   3'- cCGGCGaUGCUUaCGUGC----UUCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 40395 0.67 0.647411
Target:  5'- cGGCCGC--CGggUuCACGAccCACCGa -3'
miRNA:   3'- -CCGGCGauGCuuAcGUGCUucGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 17823 0.67 0.646283
Target:  5'- aGUCGCU-CGA--GCACGGgcucaaucgguggGGCACCGa -3'
miRNA:   3'- cCGGCGAuGCUuaCGUGCU-------------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 22537 0.68 0.636126
Target:  5'- aGCCGCUGCGcAUGCcguccGCGAucgacauGC-CCGa -3'
miRNA:   3'- cCGGCGAUGCuUACG-----UGCUu------CGuGGC- -5'
28076 5' -53.8 NC_005887.1 + 13748 0.68 0.634997
Target:  5'- uGCCG-UACGGcugGCGCGAggacgauuuccagAGCGCCGu -3'
miRNA:   3'- cCGGCgAUGCUua-CGUGCU-------------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5038 0.68 0.634997
Target:  5'- cGCUGCUGCGAcgaccgaAUcgaaaccgucugGCGCGAcgacuGCACCGa -3'
miRNA:   3'- cCGGCGAUGCU-------UA------------CGUGCUu----CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 41467 0.68 0.63274
Target:  5'- aGGCCGCcugacucgucCGGcgGCGCGGgccacgcguccacgGGCACCu -3'
miRNA:   3'- -CCGGCGau--------GCUuaCGUGCU--------------UCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 23209 0.68 0.629353
Target:  5'- gGGCgGCUAcuucaagggccacgcCGAcgGCACGcGAGCGgCGg -3'
miRNA:   3'- -CCGgCGAU---------------GCUuaCGUGC-UUCGUgGC- -5'
28076 5' -53.8 NC_005887.1 + 15158 0.68 0.624838
Target:  5'- aGG-CGCU-CGAcgGCaugGCGAAGUACCu -3'
miRNA:   3'- -CCgGCGAuGCUuaCG---UGCUUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 13625 0.68 0.624838
Target:  5'- cGGCgCGCgGCGGccGCAcucagcCGAgcAGCACCGa -3'
miRNA:   3'- -CCG-GCGaUGCUuaCGU------GCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5526 0.68 0.624838
Target:  5'- nGGCCGCaGCaGGcacGCACGAuucuGCGCCc -3'
miRNA:   3'- -CCGGCGaUG-CUua-CGUGCUu---CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 9078 0.68 0.624838
Target:  5'- cGCCgGCUGCGGcgGgACGAAGUuUCGc -3'
miRNA:   3'- cCGG-CGAUGCUuaCgUGCUUCGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.