miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 22843 0.66 0.725345
Target:  5'- aGGUCGcCUGCGccGAUGCuCGccGGCAUCGg -3'
miRNA:   3'- -CCGGC-GAUGC--UUACGuGCu-UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 36844 0.66 0.725345
Target:  5'- cGGCCgguGCUGCGGccgGUGCuGCGGccggugcuGCGCCa -3'
miRNA:   3'- -CCGG---CGAUGCU---UACG-UGCUu-------CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 28476 0.66 0.725345
Target:  5'- gGGCCGCUucagcucgACGAA-GUagACGc-GCGCCGg -3'
miRNA:   3'- -CCGGCGA--------UGCUUaCG--UGCuuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 10030 0.66 0.725345
Target:  5'- cGGCCGCgcug---GCACGAacagcGGCAUCa -3'
miRNA:   3'- -CCGGCGaugcuuaCGUGCU-----UCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 28967 0.66 0.714408
Target:  5'- cGCCGCgcCGGccuucaGCGCGA-GCGCCa -3'
miRNA:   3'- cCGGCGauGCUua----CGUGCUuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 28126 0.66 0.714408
Target:  5'- uGCCGCgcCGAAcaGCGCG--GCGCCGc -3'
miRNA:   3'- cCGGCGauGCUUa-CGUGCuuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 39152 0.66 0.713309
Target:  5'- cGGCCGCUcucccauucggagACGGAcGCGCGcGAGaucCCGa -3'
miRNA:   3'- -CCGGCGA-------------UGCUUaCGUGC-UUCgu-GGC- -5'
28076 5' -53.8 NC_005887.1 + 13917 0.66 0.703384
Target:  5'- gGGUCaGCUucGCGA--GCACGA-GCGCCu -3'
miRNA:   3'- -CCGG-CGA--UGCUuaCGUGCUuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 37839 0.66 0.703384
Target:  5'- cGCCGCcguagucgGCGAGcagacGCGCGAugcgcGCGCCGu -3'
miRNA:   3'- cCGGCGa-------UGCUUa----CGUGCUu----CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 35337 0.66 0.703384
Target:  5'- cGCCGCgGCGGccgGcCACGAgcuucacgcccGGCACCa -3'
miRNA:   3'- cCGGCGaUGCUua-C-GUGCU-----------UCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 18107 0.66 0.703384
Target:  5'- uGGCUGCUGCcg--GCACGuggccAGCAgCGc -3'
miRNA:   3'- -CCGGCGAUGcuuaCGUGCu----UCGUgGC- -5'
28076 5' -53.8 NC_005887.1 + 1582 0.66 0.703384
Target:  5'- cGCCgGCUcgGCGGc-GCGCGgcGCGCCa -3'
miRNA:   3'- cCGG-CGA--UGCUuaCGUGCuuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 14942 0.66 0.703384
Target:  5'- cGCCGC-GCGcugccGUACGAcGCGCCGc -3'
miRNA:   3'- cCGGCGaUGCuua--CGUGCUuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 37923 0.67 0.692288
Target:  5'- cGGCUGCUGCaaccauUGCAgGAucgccGCGCCu -3'
miRNA:   3'- -CCGGCGAUGcuu---ACGUgCUu----CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 5648 0.67 0.692288
Target:  5'- cGCgaGCUcgaaGCGAA-GCAUGcGGCACCGg -3'
miRNA:   3'- cCGg-CGA----UGCUUaCGUGCuUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 10150 0.67 0.692288
Target:  5'- cGGCCGgaGCGAcGUcUACGGcuGGCAUCGg -3'
miRNA:   3'- -CCGGCgaUGCU-UAcGUGCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 23976 0.67 0.681131
Target:  5'- cGGCCcacuGCU-CGA--GCGCGAGGCGgCGc -3'
miRNA:   3'- -CCGG----CGAuGCUuaCGUGCUUCGUgGC- -5'
28076 5' -53.8 NC_005887.1 + 6019 0.67 0.680012
Target:  5'- cGGCCuaUAccuggauCGAGUGCGCGgcGUcgACCGc -3'
miRNA:   3'- -CCGGcgAU-------GCUUACGUGCuuCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 27735 0.67 0.669924
Target:  5'- aGGCCGUaguagagACGGAaguggccgaUGC-CGAGcGCGCCGg -3'
miRNA:   3'- -CCGGCGa------UGCUU---------ACGuGCUU-CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 1795 0.67 0.669924
Target:  5'- cGCCGagaACucGUGCGCGA-GCGCCa -3'
miRNA:   3'- cCGGCga-UGcuUACGUGCUuCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.