miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 31060 0.71 0.431249
Target:  5'- cGGCCGCUGCGA--GCA-GAGGUagaaacGCCa -3'
miRNA:   3'- -CCGGCGAUGCUuaCGUgCUUCG------UGGc -5'
28076 5' -53.8 NC_005887.1 + 24620 0.71 0.431249
Target:  5'- cGGCCGC-ACGcGUGguCGAacAGCugCGu -3'
miRNA:   3'- -CCGGCGaUGCuUACguGCU--UCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 2567 0.71 0.431249
Target:  5'- cGCgCGCaACGAucgGCGCGA-GCGCCGc -3'
miRNA:   3'- cCG-GCGaUGCUua-CGUGCUuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 9061 0.71 0.449186
Target:  5'- cGGCCGUgaacaGCGAcaacaacgugaggGUGCAUGccagcgcGGGCACCGg -3'
miRNA:   3'- -CCGGCGa----UGCU-------------UACGUGC-------UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 6440 0.71 0.450195
Target:  5'- cGGCCGCgcCGAgaucgaaGUGCGCGAccugaAGUACgGg -3'
miRNA:   3'- -CCGGCGauGCU-------UACGUGCU-----UCGUGgC- -5'
28076 5' -53.8 NC_005887.1 + 37744 0.71 0.450195
Target:  5'- cGCCGCgGCGAGcaucuguugcaucUGCGCGGccuGCGCCu -3'
miRNA:   3'- cCGGCGaUGCUU-------------ACGUGCUu--CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 41625 0.71 0.451205
Target:  5'- cGGCCcgugaggaucuGCUGCGucUGCGCGgcGCACg- -3'
miRNA:   3'- -CCGG-----------CGAUGCuuACGUGCuuCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 2908 0.71 0.455256
Target:  5'- cGGCCGCcGCGAacGacgccgccgccaagcUGCGC-AAGCGCCGc -3'
miRNA:   3'- -CCGGCGaUGCU--U---------------ACGUGcUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 6911 0.71 0.461371
Target:  5'- uGGCCGCcgaGCGAAUcccgcaacucgGCAUGGGccGCGCCGu -3'
miRNA:   3'- -CCGGCGa--UGCUUA-----------CGUGCUU--CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 490 0.71 0.461371
Target:  5'- -uCCGCU-CGAAcgGCACGAgcaucaGGCGCCGc -3'
miRNA:   3'- ccGGCGAuGCUUa-CGUGCU------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 27866 0.7 0.471656
Target:  5'- cGCgGCgggcACGAucUGCGCGAGGC-CCGa -3'
miRNA:   3'- cCGgCGa---UGCUu-ACGUGCUUCGuGGC- -5'
28076 5' -53.8 NC_005887.1 + 12057 0.7 0.471656
Target:  5'- cGGCCuGaCUGCGAAcgucgugcgcgGCACGAucgucGCGCCGg -3'
miRNA:   3'- -CCGG-C-GAUGCUUa----------CGUGCUu----CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 4597 0.7 0.471656
Target:  5'- aGGCCGC-GCaGAUGCAacaGAugcucgccgcGGCGCCGg -3'
miRNA:   3'- -CCGGCGaUGcUUACGUg--CU----------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5245 0.7 0.471656
Target:  5'- cGGCCGC-GCGAucGC-CGAGGCugUGc -3'
miRNA:   3'- -CCGGCGaUGCUuaCGuGCUUCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 213 0.7 0.471656
Target:  5'- cGCUGCUcuGCGAAUGCGCGccAGGauCGCCa -3'
miRNA:   3'- cCGGCGA--UGCUUACGUGC--UUC--GUGGc -5'
28076 5' -53.8 NC_005887.1 + 32805 0.7 0.482057
Target:  5'- cGCCGCUucACGg--GCACGAacAGCggGCCGa -3'
miRNA:   3'- cCGGCGA--UGCuuaCGUGCU--UCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 9601 0.7 0.482057
Target:  5'- uGGCgCGCgccgGCGc--GCACGcGAGCGCCGc -3'
miRNA:   3'- -CCG-GCGa---UGCuuaCGUGC-UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 802 0.7 0.482057
Target:  5'- uGGCUGaCUuCGcGUGCGCGccGAGCGCCu -3'
miRNA:   3'- -CCGGC-GAuGCuUACGUGC--UUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 8398 0.7 0.492567
Target:  5'- cGCCGCacGCGAcGUGCuCGccGAGCGCCGu -3'
miRNA:   3'- cCGGCGa-UGCU-UACGuGC--UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 35553 0.7 0.503182
Target:  5'- uGGuCUGCU-CGAcAUGUGCGGcgAGCGCCGg -3'
miRNA:   3'- -CC-GGCGAuGCU-UACGUGCU--UCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.