Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28076 | 5' | -53.8 | NC_005887.1 | + | 12720 | 0.66 | 0.746916 |
Target: 5'- uGGUCGCgcagcaGCaGAAUGCGCucGAucGCGCCGc -3' miRNA: 3'- -CCGGCGa-----UG-CUUACGUG--CUu-CGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 2661 | 0.66 | 0.746916 |
Target: 5'- uGGgCGCggGCGA--GCAC-AAGCACCu -3' miRNA: 3'- -CCgGCGa-UGCUuaCGUGcUUCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 35337 | 0.66 | 0.703384 |
Target: 5'- cGCCGCgGCGGccgGcCACGAgcuucacgcccGGCACCa -3' miRNA: 3'- cCGGCGaUGCUua-C-GUGCU-----------UCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 18107 | 0.66 | 0.703384 |
Target: 5'- uGGCUGCUGCcg--GCACGuggccAGCAgCGc -3' miRNA: 3'- -CCGGCGAUGcuuaCGUGCu----UCGUgGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 14942 | 0.66 | 0.703384 |
Target: 5'- cGCCGC-GCGcugccGUACGAcGCGCCGc -3' miRNA: 3'- cCGGCGaUGCuua--CGUGCUuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 40117 | 0.66 | 0.729694 |
Target: 5'- aGCCGCaggacgccuacagcgUGCG-GUGCGCGcugcGCGCCGc -3' miRNA: 3'- cCGGCG---------------AUGCuUACGUGCuu--CGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 1796 | 0.66 | 0.736186 |
Target: 5'- cGGCCGCUAccCGAA-GgACGugcCGCCGa -3' miRNA: 3'- -CCGGCGAU--GCUUaCgUGCuucGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 31275 | 0.66 | 0.737264 |
Target: 5'- cGGCCGCgucgaucgccucguCGAGcucgaccgGCAuCGgcGCACCGg -3' miRNA: 3'- -CCGGCGau------------GCUUa-------CGU-GCuuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 2528 | 0.66 | 0.746916 |
Target: 5'- uGCCGC-ACGc-UGCGCaAGGCGCUGu -3' miRNA: 3'- cCGGCGaUGCuuACGUGcUUCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 1510 | 0.66 | 0.746916 |
Target: 5'- cGCCGgUGgaucCGAcUGCACGAAGauCACCu -3' miRNA: 3'- cCGGCgAU----GCUuACGUGCUUC--GUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 28476 | 0.66 | 0.725345 |
Target: 5'- gGGCCGCUucagcucgACGAA-GUagACGc-GCGCCGg -3' miRNA: 3'- -CCGGCGA--------UGCUUaCG--UGCuuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 10030 | 0.66 | 0.725345 |
Target: 5'- cGGCCGCgcug---GCACGAacagcGGCAUCa -3' miRNA: 3'- -CCGGCGaugcuuaCGUGCU-----UCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 39152 | 0.66 | 0.713309 |
Target: 5'- cGGCCGCUcucccauucggagACGGAcGCGCGcGAGaucCCGa -3' miRNA: 3'- -CCGGCGA-------------UGCUUaCGUGC-UUCgu-GGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 17193 | 0.67 | 0.65868 |
Target: 5'- cGGCCGC-ACGcg-GCaAUGuuGCGCCGc -3' miRNA: 3'- -CCGGCGaUGCuuaCG-UGCuuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 17823 | 0.67 | 0.646283 |
Target: 5'- aGUCGCU-CGA--GCACGGgcucaaucgguggGGCACCGa -3' miRNA: 3'- cCGGCGAuGCUuaCGUGCU-------------UCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 29186 | 0.67 | 0.647411 |
Target: 5'- --gCGCUGCGAGgaucUGCGCGGccuuaAGCugCGc -3' miRNA: 3'- ccgGCGAUGCUU----ACGUGCU-----UCGugGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 27568 | 0.67 | 0.647411 |
Target: 5'- aGCaCGCaGCGGAaguacaGCGCGAGcGCGCCGu -3' miRNA: 3'- cCG-GCGaUGCUUa-----CGUGCUU-CGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 633 | 0.67 | 0.647411 |
Target: 5'- aGCCGCgAUGAAaGCGCGcggcGAGCGCaCGc -3' miRNA: 3'- cCGGCGaUGCUUaCGUGC----UUCGUG-GC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 23976 | 0.67 | 0.681131 |
Target: 5'- cGGCCcacuGCU-CGA--GCGCGAGGCGgCGc -3' miRNA: 3'- -CCGG----CGAuGCUuaCGUGCUUCGUgGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 5648 | 0.67 | 0.692288 |
Target: 5'- cGCgaGCUcgaaGCGAA-GCAUGcGGCACCGg -3' miRNA: 3'- cCGg-CGA----UGCUUaCGUGCuUCGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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