miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 5038 0.68 0.634997
Target:  5'- cGCUGCUGCGAcgaccgaAUcgaaaccgucugGCGCGAcgacuGCACCGa -3'
miRNA:   3'- cCGGCGAUGCU-------UA------------CGUGCUu----CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5245 0.7 0.471656
Target:  5'- cGGCCGC-GCGAucGC-CGAGGCugUGc -3'
miRNA:   3'- -CCGGCGaUGCUuaCGuGCUUCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 5422 0.69 0.546557
Target:  5'- cGCCGCaGCGAccgGCGCGAccaCGCCGc -3'
miRNA:   3'- cCGGCGaUGCUua-CGUGCUuc-GUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5502 0.69 0.557596
Target:  5'- cGGCCGCaGCaccgGC-CGcAGCACCGg -3'
miRNA:   3'- -CCGGCGaUGcuuaCGuGCuUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 5526 0.68 0.624838
Target:  5'- nGGCCGCaGCaGGcacGCACGAuucuGCGCCc -3'
miRNA:   3'- -CCGGCGaUG-CUua-CGUGCUu---CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 5648 0.67 0.692288
Target:  5'- cGCgaGCUcgaaGCGAA-GCAUGcGGCACCGg -3'
miRNA:   3'- cCGg-CGA----UGCUUaCGUGCuUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 6019 0.67 0.680012
Target:  5'- cGGCCuaUAccuggauCGAGUGCGCGgcGUcgACCGc -3'
miRNA:   3'- -CCGGcgAU-------GCUUACGUGCuuCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 6106 0.66 0.746916
Target:  5'- cGGCCGCgcACGAGcUG-GCGAAGUgguGCCu -3'
miRNA:   3'- -CCGGCGa-UGCUU-ACgUGCUUCG---UGGc -5'
28076 5' -53.8 NC_005887.1 + 6440 0.71 0.450195
Target:  5'- cGGCCGCgcCGAgaucgaaGUGCGCGAccugaAGUACgGg -3'
miRNA:   3'- -CCGGCGauGCU-------UACGUGCU-----UCGUGgC- -5'
28076 5' -53.8 NC_005887.1 + 6911 0.71 0.461371
Target:  5'- uGGCCGCcgaGCGAAUcccgcaacucgGCAUGGGccGCGCCGu -3'
miRNA:   3'- -CCGGCGa--UGCUUA-----------CGUGCUU--CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 7024 0.7 0.510671
Target:  5'- cGGCCGCcgcgGCGcgcggcaguggagcGAUGCAgagaaggcCGAAGCGCUGc -3'
miRNA:   3'- -CCGGCGa---UGC--------------UUACGU--------GCUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 7839 0.68 0.591054
Target:  5'- uGGUCGCaGCGAcaGCACGucGAGCAUgGa -3'
miRNA:   3'- -CCGGCGaUGCUuaCGUGC--UUCGUGgC- -5'
28076 5' -53.8 NC_005887.1 + 7978 0.66 0.746916
Target:  5'- cGGCCGCcucUGAua-CGCGggGCGCuCGu -3'
miRNA:   3'- -CCGGCGau-GCUuacGUGCuuCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 8070 0.72 0.39294
Target:  5'- aGCCGCacgGCGAcgGCAUGcgcaagccgcGAGCGCUGa -3'
miRNA:   3'- cCGGCGa--UGCUuaCGUGC----------UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 8398 0.7 0.492567
Target:  5'- cGCCGCacGCGAcGUGCuCGccGAGCGCCGu -3'
miRNA:   3'- cCGGCGa-UGCU-UACGuGC--UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 9061 0.71 0.449186
Target:  5'- cGGCCGUgaacaGCGAcaacaacgugaggGUGCAUGccagcgcGGGCACCGg -3'
miRNA:   3'- -CCGGCGa----UGCU-------------UACGUGC-------UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 9078 0.68 0.624838
Target:  5'- cGCCgGCUGCGGcgGgACGAAGUuUCGc -3'
miRNA:   3'- cCGG-CGAUGCUuaCgUGCUUCGuGGC- -5'
28076 5' -53.8 NC_005887.1 + 9180 1.11 0.000793
Target:  5'- cGGCCGCUACGAAUGCACGAAGCACCGc -3'
miRNA:   3'- -CCGGCGAUGCUUACGUGCUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 9246 0.69 0.524699
Target:  5'- cGCCGCgucgGCGAucgcgucuaucuGUGCACGGcggucGGCACgGc -3'
miRNA:   3'- cCGGCGa---UGCU------------UACGUGCU-----UCGUGgC- -5'
28076 5' -53.8 NC_005887.1 + 9601 0.7 0.482057
Target:  5'- uGGCgCGCgccgGCGc--GCACGcGAGCGCCGc -3'
miRNA:   3'- -CCG-GCGa---UGCuuaCGUGC-UUCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.