miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 213 0.7 0.471656
Target:  5'- cGCUGCUcuGCGAAUGCGCGccAGGauCGCCa -3'
miRNA:   3'- cCGGCGA--UGCUUACGUGC--UUC--GUGGc -5'
28076 5' -53.8 NC_005887.1 + 312 0.66 0.751174
Target:  5'- aGGCCGCggUGCGcgcguacaccgaggaAGUGCGCGA---GCCGu -3'
miRNA:   3'- -CCGGCG--AUGC---------------UUACGUGCUucgUGGC- -5'
28076 5' -53.8 NC_005887.1 + 490 0.71 0.461371
Target:  5'- -uCCGCU-CGAAcgGCACGAgcaucaGGCGCCGc -3'
miRNA:   3'- ccGGCGAuGCUUa-CGUGCU------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 550 0.73 0.339788
Target:  5'- cGCCGCgcCGGAUacaGCGCGAAGacCGCCGg -3'
miRNA:   3'- cCGGCGauGCUUA---CGUGCUUC--GUGGC- -5'
28076 5' -53.8 NC_005887.1 + 633 0.67 0.647411
Target:  5'- aGCCGCgAUGAAaGCGCGcggcGAGCGCaCGc -3'
miRNA:   3'- cCGGCGaUGCUUaCGUGC----UUCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 802 0.7 0.482057
Target:  5'- uGGCUGaCUuCGcGUGCGCGccGAGCGCCu -3'
miRNA:   3'- -CCGGC-GAuGCuUACGUGC--UUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 1233 0.69 0.557596
Target:  5'- cGGgCGCUGCGcg-GCGCucAGCACgCGa -3'
miRNA:   3'- -CCgGCGAUGCuuaCGUGcuUCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 1510 0.66 0.746916
Target:  5'- cGCCGgUGgaucCGAcUGCACGAAGauCACCu -3'
miRNA:   3'- cCGGCgAU----GCUuACGUGCUUC--GUGGc -5'
28076 5' -53.8 NC_005887.1 + 1582 0.66 0.703384
Target:  5'- cGCCgGCUcgGCGGc-GCGCGgcGCGCCa -3'
miRNA:   3'- cCGG-CGA--UGCUuaCGUGCuuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 1795 0.67 0.669924
Target:  5'- cGCCGagaACucGUGCGCGA-GCGCCa -3'
miRNA:   3'- cCGGCga-UGcuUACGUGCUuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 1796 0.66 0.736186
Target:  5'- cGGCCGCUAccCGAA-GgACGugcCGCCGa -3'
miRNA:   3'- -CCGGCGAU--GCUUaCgUGCuucGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 2453 0.66 0.725345
Target:  5'- cGGCaccguauGCUgguccaccauucACGuGAUGCGCGAGGCGCUc -3'
miRNA:   3'- -CCGg------CGA------------UGC-UUACGUGCUUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 2528 0.66 0.746916
Target:  5'- uGCCGC-ACGc-UGCGCaAGGCGCUGu -3'
miRNA:   3'- cCGGCGaUGCuuACGUGcUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 2567 0.71 0.431249
Target:  5'- cGCgCGCaACGAucgGCGCGA-GCGCCGc -3'
miRNA:   3'- cCG-GCGaUGCUua-CGUGCUuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 2661 0.66 0.746916
Target:  5'- uGGgCGCggGCGA--GCAC-AAGCACCu -3'
miRNA:   3'- -CCgGCGa-UGCUuaCGUGcUUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 2908 0.71 0.455256
Target:  5'- cGGCCGCcGCGAacGacgccgccgccaagcUGCGC-AAGCGCCGc -3'
miRNA:   3'- -CCGGCGaUGCU--U---------------ACGUGcUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 3338 0.68 0.624838
Target:  5'- aGCCGCcguCGAcUGCGCGGuGGCACg- -3'
miRNA:   3'- cCGGCGau-GCUuACGUGCU-UCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 4474 0.69 0.546557
Target:  5'- cGGCUGCcGCGAagGUGC-CGAacGGCGCgCGc -3'
miRNA:   3'- -CCGGCGaUGCU--UACGuGCU--UCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 4520 0.74 0.299623
Target:  5'- cGCCGaCUACGGcgGCgucccggucgagGCGAugAGCACCGa -3'
miRNA:   3'- cCGGC-GAUGCUuaCG------------UGCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 4597 0.7 0.471656
Target:  5'- aGGCCGC-GCaGAUGCAacaGAugcucgccgcGGCGCCGg -3'
miRNA:   3'- -CCGGCGaUGcUUACGUg--CU----------UCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.