miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 35553 0.7 0.503182
Target:  5'- uGGuCUGCU-CGAcAUGUGCGGcgAGCGCCGg -3'
miRNA:   3'- -CC-GGCGAuGCU-UACGUGCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 11735 0.71 0.411819
Target:  5'- cGGCgCGC-ACGAAUGCACGcaacAGCaugaucACCGg -3'
miRNA:   3'- -CCG-GCGaUGCUUACGUGCu---UCG------UGGC- -5'
28076 5' -53.8 NC_005887.1 + 24620 0.71 0.431249
Target:  5'- cGGCCGC-ACGcGUGguCGAacAGCugCGu -3'
miRNA:   3'- -CCGGCGaUGCuUACguGCU--UCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 9061 0.71 0.449186
Target:  5'- cGGCCGUgaacaGCGAcaacaacgugaggGUGCAUGccagcgcGGGCACCGg -3'
miRNA:   3'- -CCGGCGa----UGCU-------------UACGUGC-------UUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 41625 0.71 0.451205
Target:  5'- cGGCCcgugaggaucuGCUGCGucUGCGCGgcGCACg- -3'
miRNA:   3'- -CCGG-----------CGAUGCuuACGUGCuuCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 2908 0.71 0.455256
Target:  5'- cGGCCGCcGCGAacGacgccgccgccaagcUGCGC-AAGCGCCGc -3'
miRNA:   3'- -CCGGCGaUGCU--U---------------ACGUGcUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 6911 0.71 0.461371
Target:  5'- uGGCCGCcgaGCGAAUcccgcaacucgGCAUGGGccGCGCCGu -3'
miRNA:   3'- -CCGGCGa--UGCUUA-----------CGUGCUU--CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 4597 0.7 0.471656
Target:  5'- aGGCCGC-GCaGAUGCAacaGAugcucgccgcGGCGCCGg -3'
miRNA:   3'- -CCGGCGaUGcUUACGUg--CU----------UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 32805 0.7 0.482057
Target:  5'- cGCCGCUucACGg--GCACGAacAGCggGCCGa -3'
miRNA:   3'- cCGGCGA--UGCuuaCGUGCU--UCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 11108 0.72 0.39294
Target:  5'- cGGCUGgUgcgcGCGAAgcugGC-CGAGGCGCCGu -3'
miRNA:   3'- -CCGGCgA----UGCUUa---CGuGCUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 29813 0.72 0.374633
Target:  5'- uGGaaGuCUGCGggUGUGCGcGGCGCCa -3'
miRNA:   3'- -CCggC-GAUGCuuACGUGCuUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 40174 0.72 0.365698
Target:  5'- aGCUGC-GCGAcgGCACGAAGggaaucgcCGCCGg -3'
miRNA:   3'- cCGGCGaUGCUuaCGUGCUUC--------GUGGC- -5'
28076 5' -53.8 NC_005887.1 + 16243 0.75 0.256397
Target:  5'- cGGCCG--GCGAGcGCACG-GGCACCGu -3'
miRNA:   3'- -CCGGCgaUGCUUaCGUGCuUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 24114 0.75 0.27021
Target:  5'- uGGCCguGCUGCGcgugucGUGCGgugUGAAGCGCCGg -3'
miRNA:   3'- -CCGG--CGAUGCu-----UACGU---GCUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 18149 0.74 0.284617
Target:  5'- gGGCCGCcgACGucGUGC-CGAAGCugCu -3'
miRNA:   3'- -CCGGCGa-UGCu-UACGuGCUUCGugGc -5'
28076 5' -53.8 NC_005887.1 + 15770 0.74 0.299623
Target:  5'- aGGCCGCggccGCGAagGCGCaGAAGCAgaUCGa -3'
miRNA:   3'- -CCGGCGa---UGCUuaCGUG-CUUCGU--GGC- -5'
28076 5' -53.8 NC_005887.1 + 4520 0.74 0.299623
Target:  5'- cGCCGaCUACGGcgGCgucccggucgagGCGAugAGCACCGa -3'
miRNA:   3'- cCGGC-GAUGCUuaCG------------UGCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 23515 0.74 0.306573
Target:  5'- cGGCCGCgcugACGAAcGCGCGGgugagcuGGCAgCGu -3'
miRNA:   3'- -CCGGCGa---UGCUUaCGUGCU-------UCGUgGC- -5'
28076 5' -53.8 NC_005887.1 + 26337 0.73 0.315234
Target:  5'- uGGCCggcGCUGgcCGggUGCGCGAAcauCACCGg -3'
miRNA:   3'- -CCGG---CGAU--GCuuACGUGCUUc--GUGGC- -5'
28076 5' -53.8 NC_005887.1 + 550 0.73 0.339788
Target:  5'- cGCCGCgcCGGAUacaGCGCGAAGacCGCCGg -3'
miRNA:   3'- cCGGCGauGCUUA---CGUGCUUC--GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.