Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28076 | 5' | -53.8 | NC_005887.1 | + | 7978 | 0.66 | 0.746916 |
Target: 5'- cGGCCGCcucUGAua-CGCGggGCGCuCGu -3' miRNA: 3'- -CCGGCGau-GCUuacGUGCuuCGUG-GC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 13917 | 0.66 | 0.703384 |
Target: 5'- gGGUCaGCUucGCGA--GCACGA-GCGCCu -3' miRNA: 3'- -CCGG-CGA--UGCUuaCGUGCUuCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 37839 | 0.66 | 0.703384 |
Target: 5'- cGCCGCcguagucgGCGAGcagacGCGCGAugcgcGCGCCGu -3' miRNA: 3'- cCGGCGa-------UGCUUa----CGUGCUu----CGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 9180 | 1.11 | 0.000793 |
Target: 5'- cGGCCGCUACGAAUGCACGAAGCACCGc -3' miRNA: 3'- -CCGGCGAUGCUUACGUGCUUCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 35099 | 0.66 | 0.746916 |
Target: 5'- cGGUCGCUGcCGAGgucgaugauauUGguCGAuGCGCCc -3' miRNA: 3'- -CCGGCGAU-GCUU-----------ACguGCUuCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 27483 | 0.66 | 0.746916 |
Target: 5'- uGCCGC-GCG-GUGCGCGcuguuGCugCGg -3' miRNA: 3'- cCGGCGaUGCuUACGUGCuu---CGugGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 1510 | 0.66 | 0.746916 |
Target: 5'- cGCCGgUGgaucCGAcUGCACGAAGauCACCu -3' miRNA: 3'- cCGGCgAU----GCUuACGUGCUUC--GUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 29864 | 0.66 | 0.745848 |
Target: 5'- cGCCGCUGaauCGAucaGCGCGAgcugagaAGCGCgCGu -3' miRNA: 3'- cCGGCGAU---GCUua-CGUGCU-------UCGUG-GC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 19047 | 0.66 | 0.731862 |
Target: 5'- gGGCCGCagUGCGGcguuguucuucgGCGCG-GGCugCGg -3' miRNA: 3'- -CCGGCG--AUGCUua----------CGUGCuUCGugGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 28126 | 0.66 | 0.714408 |
Target: 5'- uGCCGCgcCGAAcaGCGCG--GCGCCGc -3' miRNA: 3'- cCGGCGauGCUUa-CGUGCuuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 36844 | 0.66 | 0.725345 |
Target: 5'- cGGCCgguGCUGCGGccgGUGCuGCGGccggugcuGCGCCa -3' miRNA: 3'- -CCGG---CGAUGCU---UACG-UGCUu-------CGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 28691 | 0.66 | 0.736186 |
Target: 5'- cGCCGCUgaucGCGuucUGCACGucGGUGCUGc -3' miRNA: 3'- cCGGCGA----UGCuu-ACGUGCu-UCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 6106 | 0.66 | 0.746916 |
Target: 5'- cGGCCGCgcACGAGcUG-GCGAAGUgguGCCu -3' miRNA: 3'- -CCGGCGa-UGCUU-ACgUGCUUCG---UGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 22843 | 0.66 | 0.725345 |
Target: 5'- aGGUCGcCUGCGccGAUGCuCGccGGCAUCGg -3' miRNA: 3'- -CCGGC-GAUGC--UUACGuGCu-UCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 39841 | 0.66 | 0.746916 |
Target: 5'- uGCgGCagucCGggUGCACG-AGCagGCCGg -3' miRNA: 3'- cCGgCGau--GCuuACGUGCuUCG--UGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 23954 | 0.66 | 0.742638 |
Target: 5'- cGCCGCggcguaggccauCGggUuCGCGA-GCGCCGg -3' miRNA: 3'- cCGGCGau----------GCuuAcGUGCUuCGUGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 28967 | 0.66 | 0.714408 |
Target: 5'- cGCCGCgcCGGccuucaGCGCGA-GCGCCa -3' miRNA: 3'- cCGGCGauGCUua----CGUGCUuCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 1582 | 0.66 | 0.703384 |
Target: 5'- cGCCgGCUcgGCGGc-GCGCGgcGCGCCa -3' miRNA: 3'- cCGG-CGA--UGCUuaCGUGCuuCGUGGc -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 39784 | 0.66 | 0.746916 |
Target: 5'- cGCCGCUcACGGccAUGCGgCGgAAGCaguaGCCGc -3' miRNA: 3'- cCGGCGA-UGCU--UACGU-GC-UUCG----UGGC- -5' |
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28076 | 5' | -53.8 | NC_005887.1 | + | 14644 | 0.66 | 0.746916 |
Target: 5'- cGCCGU--CGAGUGCuacgcgGCGAGGUACgGc -3' miRNA: 3'- cCGGCGauGCUUACG------UGCUUCGUGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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