miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 41625 0.71 0.451205
Target:  5'- cGGCCcgugaggaucuGCUGCGucUGCGCGgcGCACg- -3'
miRNA:   3'- -CCGG-----------CGAUGCuuACGUGCuuCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 41467 0.68 0.63274
Target:  5'- aGGCCGCcugacucgucCGGcgGCGCGGgccacgcguccacgGGCACCu -3'
miRNA:   3'- -CCGGCGau--------GCUuaCGUGCU--------------UCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 40860 0.69 0.557596
Target:  5'- cGGCCGCgcc----GCGCGA-GCGCCGc -3'
miRNA:   3'- -CCGGCGaugcuuaCGUGCUuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 40395 0.67 0.647411
Target:  5'- cGGCCGC--CGggUuCACGAccCACCGa -3'
miRNA:   3'- -CCGGCGauGCuuAcGUGCUucGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 40174 0.72 0.365698
Target:  5'- aGCUGC-GCGAcgGCACGAAGggaaucgcCGCCGg -3'
miRNA:   3'- cCGGCGaUGCUuaCGUGCUUC--------GUGGC- -5'
28076 5' -53.8 NC_005887.1 + 40117 0.66 0.729694
Target:  5'- aGCCGCaggacgccuacagcgUGCG-GUGCGCGcugcGCGCCGc -3'
miRNA:   3'- cCGGCG---------------AUGCuUACGUGCuu--CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 39841 0.66 0.746916
Target:  5'- uGCgGCagucCGggUGCACG-AGCagGCCGg -3'
miRNA:   3'- cCGgCGau--GCuuACGUGCuUCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 39784 0.66 0.746916
Target:  5'- cGCCGCUcACGGccAUGCGgCGgAAGCaguaGCCGc -3'
miRNA:   3'- cCGGCGA-UGCU--UACGU-GC-UUCG----UGGC- -5'
28076 5' -53.8 NC_005887.1 + 39152 0.66 0.713309
Target:  5'- cGGCCGCUcucccauucggagACGGAcGCGCGcGAGaucCCGa -3'
miRNA:   3'- -CCGGCGA-------------UGCUUaCGUGC-UUCgu-GGC- -5'
28076 5' -53.8 NC_005887.1 + 38116 0.67 0.65868
Target:  5'- cGGCCGa-GCGucgGCGCGAgcAGCACg- -3'
miRNA:   3'- -CCGGCgaUGCuuaCGUGCU--UCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 37923 0.67 0.692288
Target:  5'- cGGCUGCUGCaaccauUGCAgGAucgccGCGCCu -3'
miRNA:   3'- -CCGGCGAUGcuu---ACGUgCUu----CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 37839 0.66 0.703384
Target:  5'- cGCCGCcguagucgGCGAGcagacGCGCGAugcgcGCGCCGu -3'
miRNA:   3'- cCGGCGa-------UGCUUa----CGUGCUu----CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 37744 0.71 0.450195
Target:  5'- cGCCGCgGCGAGcaucuguugcaucUGCGCGGccuGCGCCu -3'
miRNA:   3'- cCGGCGaUGCUU-------------ACGUGCUu--CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 36844 0.66 0.725345
Target:  5'- cGGCCgguGCUGCGGccgGUGCuGCGGccggugcuGCGCCa -3'
miRNA:   3'- -CCGG---CGAUGCU---UACG-UGCUu-------CGUGGc -5'
28076 5' -53.8 NC_005887.1 + 35553 0.7 0.503182
Target:  5'- uGGuCUGCU-CGAcAUGUGCGGcgAGCGCCGg -3'
miRNA:   3'- -CC-GGCGAuGCU-UACGUGCU--UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 35337 0.66 0.703384
Target:  5'- cGCCGCgGCGGccgGcCACGAgcuucacgcccGGCACCa -3'
miRNA:   3'- cCGGCGaUGCUua-C-GUGCU-----------UCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 35099 0.66 0.746916
Target:  5'- cGGUCGCUGcCGAGgucgaugauauUGguCGAuGCGCCc -3'
miRNA:   3'- -CCGGCGAU-GCUU-----------ACguGCUuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 34528 0.68 0.589933
Target:  5'- aGGCCGCaGCGGAUGCcCGGGuucgucuucgucuGCGCg- -3'
miRNA:   3'- -CCGGCGaUGCUUACGuGCUU-------------CGUGgc -5'
28076 5' -53.8 NC_005887.1 + 34008 0.68 0.602292
Target:  5'- cGGCCGCcagacggcacGCGAAUGCcucGCGAaacAGCGCg- -3'
miRNA:   3'- -CCGGCGa---------UGCUUACG---UGCU---UCGUGgc -5'
28076 5' -53.8 NC_005887.1 + 33656 0.69 0.557596
Target:  5'- cGCCGCgGCGGAUcGC-CGGGcccuGCACCGu -3'
miRNA:   3'- cCGGCGaUGCUUA-CGuGCUU----CGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.