miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 3' -60.2 NC_005887.1 + 8473 1.08 0.000242
Target:  5'- aUACGGCGACGGAGCGCUGUCGGCUGCc -3'
miRNA:   3'- -AUGCCGCUGCCUCGCGACAGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 21273 0.75 0.086656
Target:  5'- cGCGGCGGCGGcguauGCGCUGcUGGCgucGCc -3'
miRNA:   3'- aUGCCGCUGCCu----CGCGACaGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 30956 0.75 0.086656
Target:  5'- gGCGGCGcCGGccgccAGCGCUc-CGGCUGCg -3'
miRNA:   3'- aUGCCGCuGCC-----UCGCGAcaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 17172 0.75 0.094319
Target:  5'- --aGGCGugGGAGCGCgcgaacgCGGCcGCa -3'
miRNA:   3'- augCCGCugCCUCGCGaca----GCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 32501 0.74 0.106725
Target:  5'- gUGCGGCGcGCGGcguucagguuggccGCGCUGacCGGCUGCg -3'
miRNA:   3'- -AUGCCGC-UGCCu-------------CGCGACa-GCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 14219 0.74 0.108531
Target:  5'- cAgGGCGGCGccGCGCUGuUCGGCgcgGCa -3'
miRNA:   3'- aUgCCGCUGCcuCGCGAC-AGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 10099 0.73 0.124389
Target:  5'- gGCGGCccgcgccGACGGccaGCUGaUCGGCUGCa -3'
miRNA:   3'- aUGCCG-------CUGCCucgCGAC-AGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 38719 0.73 0.135133
Target:  5'- gACGGCGACaGGuuuucacggccgaAGCGCUGcgCGGCcugGCg -3'
miRNA:   3'- aUGCCGCUG-CC-------------UCGCGACa-GCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 13086 0.72 0.142763
Target:  5'- cGCGGCGcucgaucGCGGAGUGCUGcagGGCgUGCc -3'
miRNA:   3'- aUGCCGC-------UGCCUCGCGACag-CCG-ACG- -5'
28077 3' -60.2 NC_005887.1 + 26101 0.72 0.159648
Target:  5'- -uCGGCGACGGugcccguGCGCUcGcCGGCcgGCg -3'
miRNA:   3'- auGCCGCUGCCu------CGCGA-CaGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 11376 0.72 0.159649
Target:  5'- cGCgGGCGucagcgcagcCGGAGCGCUGgCGGCcgGCg -3'
miRNA:   3'- aUG-CCGCu---------GCCUCGCGACaGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 23245 0.71 0.168069
Target:  5'- aGCGGCGGCGGucggcgcgcaaaaGGCGCagcucgUGgCGGUUGCc -3'
miRNA:   3'- aUGCCGCUGCC-------------UCGCG------ACaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 27702 0.71 0.172659
Target:  5'- -cCGGCGACGGGcagcaccGCGC---CGGCUGCc -3'
miRNA:   3'- auGCCGCUGCCU-------CGCGacaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 27404 0.71 0.173125
Target:  5'- uUGCGGCGcgucguACGGcAGCGCg--CGGCgUGCg -3'
miRNA:   3'- -AUGCCGC------UGCC-UCGCGacaGCCG-ACG- -5'
28077 3' -60.2 NC_005887.1 + 41361 0.71 0.182176
Target:  5'- cACGGCGGcCGGcaauuuGCGCgUGUCGGCgaucaccucgugcUGCa -3'
miRNA:   3'- aUGCCGCU-GCCu-----CGCG-ACAGCCG-------------ACG- -5'
28077 3' -60.2 NC_005887.1 + 34939 0.7 0.196278
Target:  5'- gGCGGCGGCGGGuGCGaccguggcgaucgucGUCGGCgaGCu -3'
miRNA:   3'- aUGCCGCUGCCU-CGCga-------------CAGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 30702 0.7 0.203144
Target:  5'- -uCGGCGAgcaGGuGCGCgagcagcuUGUCGcGCUGCg -3'
miRNA:   3'- auGCCGCUg--CCuCGCG--------ACAGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 34241 0.7 0.214113
Target:  5'- aGCGGCGccuCGGcgAGCGCgg-CGaGCUGCg -3'
miRNA:   3'- aUGCCGCu--GCC--UCGCGacaGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 13372 0.7 0.219786
Target:  5'- -cCGGCGAUGGcgcucGCGCUGaaGGCcgGCg -3'
miRNA:   3'- auGCCGCUGCCu----CGCGACagCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 16690 0.7 0.219786
Target:  5'- gAUGGCGAC---GCGCUG-CGGCUGg -3'
miRNA:   3'- aUGCCGCUGccuCGCGACaGCCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.