miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 3' -60.2 NC_005887.1 + 1485 0.66 0.38772
Target:  5'- gACGGCGuGCGGcgcucGCGCggcgCGGCcgUGCg -3'
miRNA:   3'- aUGCCGC-UGCCu----CGCGaca-GCCG--ACG- -5'
28077 3' -60.2 NC_005887.1 + 2194 0.66 0.378014
Target:  5'- cGCGGUGAuCGGgcAGCGCaaaccgaUGggCGGCUGg -3'
miRNA:   3'- aUGCCGCU-GCC--UCGCG-------ACa-GCCGACg -5'
28077 3' -60.2 NC_005887.1 + 3301 0.68 0.269892
Target:  5'- -cCGGCGACGcAGCuCUGgcaUCGGCUGa -3'
miRNA:   3'- auGCCGCUGCcUCGcGAC---AGCCGACg -5'
28077 3' -60.2 NC_005887.1 + 5239 0.66 0.368471
Target:  5'- --gGGCGACGGccGCGCgaucgccgaGGCUGUg -3'
miRNA:   3'- augCCGCUGCCu-CGCGacag-----CCGACG- -5'
28077 3' -60.2 NC_005887.1 + 6291 0.69 0.225587
Target:  5'- gACGGCGuGCGcGAGCGC-GUCgaGGCcuUGCg -3'
miRNA:   3'- aUGCCGC-UGC-CUCGCGaCAG--CCG--ACG- -5'
28077 3' -60.2 NC_005887.1 + 7212 0.69 0.237578
Target:  5'- cGCGuGCG-CaG-GCGCUGUCGGCgucggGCg -3'
miRNA:   3'- aUGC-CGCuGcCuCGCGACAGCCGa----CG- -5'
28077 3' -60.2 NC_005887.1 + 8473 1.08 0.000242
Target:  5'- aUACGGCGACGGAGCGCUGUCGGCUGCc -3'
miRNA:   3'- -AUGCCGCUGCCUCGCGACAGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 10099 0.73 0.124389
Target:  5'- gGCGGCccgcgccGACGGccaGCUGaUCGGCUGCa -3'
miRNA:   3'- aUGCCG-------CUGCCucgCGAC-AGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 11376 0.72 0.159649
Target:  5'- cGCgGGCGucagcgcagcCGGAGCGCUGgCGGCcgGCg -3'
miRNA:   3'- aUG-CCGCu---------GCCUCGCGACaGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 11779 0.68 0.283777
Target:  5'- -uCGGCGGCGuccuCGCUGcUCGGCgGCg -3'
miRNA:   3'- auGCCGCUGCcuc-GCGAC-AGCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 13086 0.72 0.142763
Target:  5'- cGCGGCGcucgaucGCGGAGUGCUGcagGGCgUGCc -3'
miRNA:   3'- aUGCCGC-------UGCCUCGCGACag-CCG-ACG- -5'
28077 3' -60.2 NC_005887.1 + 13372 0.7 0.219786
Target:  5'- -cCGGCGAUGGcgcucGCGCUGaaGGCcgGCg -3'
miRNA:   3'- auGCCGCUGCCu----CGCGACagCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 14219 0.74 0.108531
Target:  5'- cAgGGCGGCGccGCGCUGuUCGGCgcgGCa -3'
miRNA:   3'- aUgCCGCUGCcuCGCGAC-AGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 14773 0.66 0.378889
Target:  5'- gACGGCG-CGcucGCGCUGUacuuccgcugCGuGCUGCa -3'
miRNA:   3'- aUGCCGCuGCcu-CGCGACA----------GC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 16690 0.7 0.219786
Target:  5'- gAUGGCGAC---GCGCUG-CGGCUGg -3'
miRNA:   3'- aUGCCGCUGccuCGCGACaGCCGACg -5'
28077 3' -60.2 NC_005887.1 + 17172 0.75 0.094319
Target:  5'- --aGGCGugGGAGCGCgcgaacgCGGCcGCa -3'
miRNA:   3'- augCCGCugCCUCGCGaca----GCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 18929 0.7 0.219786
Target:  5'- gGCGGCugcGACGagcugaucGAcGCGCUGcugCGGCUGCc -3'
miRNA:   3'- aUGCCG---CUGC--------CU-CGCGACa--GCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 21273 0.75 0.086656
Target:  5'- cGCGGCGGCGGcguauGCGCUGcUGGCgucGCc -3'
miRNA:   3'- aUGCCGCUGCCu----CGCGACaGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 22083 0.69 0.233925
Target:  5'- cACGGCGGCcgucGGGGCccuucuguggaaacuGCUGcCGGgUGCg -3'
miRNA:   3'- aUGCCGCUG----CCUCG---------------CGACaGCCgACG- -5'
28077 3' -60.2 NC_005887.1 + 23245 0.71 0.168069
Target:  5'- aGCGGCGGCGGucggcgcgcaaaaGGCGCagcucgUGgCGGUUGCc -3'
miRNA:   3'- aUGCCGCUGCC-------------UCGCG------ACaGCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.