miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 3' -60.2 NC_005887.1 + 23424 0.66 0.353217
Target:  5'- gACGGCcgcuGCGagauucgguGAGCGCUG-CGgGCUGCc -3'
miRNA:   3'- aUGCCGc---UGC---------CUCGCGACaGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 24212 0.66 0.38772
Target:  5'- gACGuCGGCGGcccGCGCUucGcCGGUUGCg -3'
miRNA:   3'- aUGCcGCUGCCu--CGCGA--CaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 26101 0.72 0.159648
Target:  5'- -uCGGCGACGGugcccguGCGCUcGcCGGCcgGCg -3'
miRNA:   3'- auGCCGCUGCCu------CGCGA-CaGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 26401 0.67 0.305654
Target:  5'- aGCGGCGuGCGGcGCGUgGcCGGC-GCa -3'
miRNA:   3'- aUGCCGC-UGCCuCGCGaCaGCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 27404 0.71 0.173125
Target:  5'- uUGCGGCGcgucguACGGcAGCGCg--CGGCgUGCg -3'
miRNA:   3'- -AUGCCGC------UGCC-UCGCGacaGCCG-ACG- -5'
28077 3' -60.2 NC_005887.1 + 27470 0.66 0.378889
Target:  5'- aGCuGGCGcauucugccgcGCGGugcGCGCUGUU-GCUGCg -3'
miRNA:   3'- aUG-CCGC-----------UGCCu--CGCGACAGcCGACG- -5'
28077 3' -60.2 NC_005887.1 + 27702 0.71 0.172659
Target:  5'- -cCGGCGACGGGcagcaccGCGC---CGGCUGCc -3'
miRNA:   3'- auGCCGCUGCCU-------CGCGacaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 28326 0.69 0.250097
Target:  5'- cUGCGcCGGCGGcGCGCcGgCGGUUGCg -3'
miRNA:   3'- -AUGCcGCUGCCuCGCGaCaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 29618 0.66 0.370194
Target:  5'- cGCGGCG-CGaucGAGCGCauUCuGCUGCu -3'
miRNA:   3'- aUGCCGCuGC---CUCGCGacAGcCGACG- -5'
28077 3' -60.2 NC_005887.1 + 30144 0.66 0.370194
Target:  5'- -cCGGCGcgccCGGcgcGGCGCUGUccuucgCGGuCUGCa -3'
miRNA:   3'- auGCCGCu---GCC---UCGCGACA------GCC-GACG- -5'
28077 3' -60.2 NC_005887.1 + 30702 0.7 0.203144
Target:  5'- -uCGGCGAgcaGGuGCGCgagcagcuUGUCGcGCUGCg -3'
miRNA:   3'- auGCCGCUg--CCuCGCG--------ACAGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 30956 0.75 0.086656
Target:  5'- gGCGGCGcCGGccgccAGCGCUc-CGGCUGCg -3'
miRNA:   3'- aUGCCGCuGCC-----UCGCGAcaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 32501 0.74 0.106725
Target:  5'- gUGCGGCGcGCGGcguucagguuggccGCGCUGacCGGCUGCg -3'
miRNA:   3'- -AUGCCGC-UGCCu-------------CGCGACa-GCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 33527 0.68 0.276765
Target:  5'- -uCGGCGAucacCGuGAGCGCcugcuucugGUCGGgUGCg -3'
miRNA:   3'- auGCCGCU----GC-CUCGCGa--------CAGCCgACG- -5'
28077 3' -60.2 NC_005887.1 + 33810 0.66 0.396685
Target:  5'- cACGGCcaccACGcGGGUGUcagGUCGGCgcgGCg -3'
miRNA:   3'- aUGCCGc---UGC-CUCGCGa--CAGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 34105 0.69 0.256559
Target:  5'- aGCGGUGACGccGAGCGC--UCGGCa-- -3'
miRNA:   3'- aUGCCGCUGC--CUCGCGacAGCCGacg -5'
28077 3' -60.2 NC_005887.1 + 34241 0.7 0.214113
Target:  5'- aGCGGCGccuCGGcgAGCGCgg-CGaGCUGCg -3'
miRNA:   3'- aUGCCGCu--GCC--UCGCGacaGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 34939 0.7 0.196278
Target:  5'- gGCGGCGGCGGGuGCGaccguggcgaucgucGUCGGCgaGCu -3'
miRNA:   3'- aUGCCGCUGCCU-CGCga-------------CAGCCGa-CG- -5'
28077 3' -60.2 NC_005887.1 + 35199 0.67 0.328009
Target:  5'- aACGGCGGgGcGAuucguuGCGCagcagcuUGUCGGcCUGCg -3'
miRNA:   3'- aUGCCGCUgC-CU------CGCG-------ACAGCC-GACG- -5'
28077 3' -60.2 NC_005887.1 + 35259 0.69 0.243771
Target:  5'- cACGcGCGAUuccguguucaGGAGCGC-GUCGGUgcgcUGCa -3'
miRNA:   3'- aUGC-CGCUG----------CCUCGCGaCAGCCG----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.