miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 24891 0.67 0.332876
Target:  5'- --aUGCCGcGCGCUCGGUcuUCuuCGCa -3'
miRNA:   3'- gagACGGCuCGCGAGCCGc-AGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 17467 0.67 0.325017
Target:  5'- ---aGaCCGAGCGCgCGGCaUCgGCCGCc -3'
miRNA:   3'- gagaC-GGCUCGCGaGCCGcAG-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1539 0.67 0.325017
Target:  5'- cCUCgucaucGUCGAGCGg-C-GCGUCGCCGCc -3'
miRNA:   3'- -GAGa-----CGGCUCGCgaGcCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 36202 0.67 0.325017
Target:  5'- --gUGCCGAGgaaCGaUUCGGCGUCGagcaCGCu -3'
miRNA:   3'- gagACGGCUC---GC-GAGCCGCAGUg---GCG- -5'
28078 3' -60.3 NC_005887.1 + 7015 0.68 0.309715
Target:  5'- gCUCgugGCCGGcCGCcgCGGCG-CGCgGCa -3'
miRNA:   3'- -GAGa--CGGCUcGCGa-GCCGCaGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 28413 0.68 0.302272
Target:  5'- gUCgcaGCCGAGCGCgcgcaGGCGcUCGugcUCGCg -3'
miRNA:   3'- gAGa--CGGCUCGCGag---CCGC-AGU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 14069 0.68 0.302272
Target:  5'- -gCUG-CGcGCGCUCGGCGU-GCCGa -3'
miRNA:   3'- gaGACgGCuCGCGAGCCGCAgUGGCg -5'
28078 3' -60.3 NC_005887.1 + 23970 0.68 0.294968
Target:  5'- aUCggGUucgCGAGCGC-CGGCG-CGCCGUc -3'
miRNA:   3'- gAGa-CG---GCUCGCGaGCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39927 0.68 0.294968
Target:  5'- aUCgaGCCGGGCGCgUCGacgacGCG-CAUCGCg -3'
miRNA:   3'- gAGa-CGGCUCGCG-AGC-----CGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 33878 0.68 0.294968
Target:  5'- ---aGCCGAcaGCGCUC--CGUCGCCGUa -3'
miRNA:   3'- gagaCGGCU--CGCGAGccGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 32298 0.68 0.287802
Target:  5'- aUC-GUCGGGCcaGC-CGGCG-CGCCGCa -3'
miRNA:   3'- gAGaCGGCUCG--CGaGCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 36293 0.68 0.287802
Target:  5'- aCUCguccgguugGCCGAucuGCGCggCGGuCGaCGCCGCg -3'
miRNA:   3'- -GAGa--------CGGCU---CGCGa-GCC-GCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 26495 0.68 0.287802
Target:  5'- -cCUGCUGcGCGCg-GGCGUuucccucgaucgCGCCGCg -3'
miRNA:   3'- gaGACGGCuCGCGagCCGCA------------GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13612 0.68 0.287802
Target:  5'- -gCUGCUGgcAGCGCggcgcgCGGCG--GCCGCa -3'
miRNA:   3'- gaGACGGC--UCGCGa-----GCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 30933 0.68 0.287802
Target:  5'- uUgUGCCaGcGCGCUCGGCGgugaugucggCGcCCGCg -3'
miRNA:   3'- gAgACGG-CuCGCGAGCCGCa---------GU-GGCG- -5'
28078 3' -60.3 NC_005887.1 + 33412 0.68 0.280773
Target:  5'- aUCgUGUCG-GCGCUCuGCGUCG-CGCg -3'
miRNA:   3'- gAG-ACGGCuCGCGAGcCGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 35328 0.68 0.280773
Target:  5'- -aCUGCCGcGCGCcgCGGCG--GCCGg -3'
miRNA:   3'- gaGACGGCuCGCGa-GCCGCagUGGCg -5'
28078 3' -60.3 NC_005887.1 + 14374 0.68 0.280773
Target:  5'- -cCUGuUCGAGUcgccGCUCGGCG-CGCgCGCg -3'
miRNA:   3'- gaGAC-GGCUCG----CGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 13306 0.68 0.273882
Target:  5'- aUCgGCCaGGCGUUCGGCaaCGCCGg -3'
miRNA:   3'- gAGaCGGcUCGCGAGCCGcaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 32778 0.68 0.273882
Target:  5'- ---aGCCGGcucguGCGCaggaUCGGCGcgCGCCGCu -3'
miRNA:   3'- gagaCGGCU-----CGCG----AGCCGCa-GUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.