miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 39141 0.66 0.382919
Target:  5'- uUCUG-CGAGCGCUCgcGGCccuucUCGCUGUc -3'
miRNA:   3'- gAGACgGCUCGCGAG--CCGc----AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6915 0.66 0.382919
Target:  5'- ---cGCCGAGCGaaucccgcaaCUCGGCauggGCCGCg -3'
miRNA:   3'- gagaCGGCUCGC----------GAGCCGcag-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 40781 0.66 0.375101
Target:  5'- ---cGCCGAGCcgGCggucgagguucguggCGGCGacgCGCCGCu -3'
miRNA:   3'- gagaCGGCUCG--CGa--------------GCCGCa--GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 40869 0.66 0.374239
Target:  5'- ---cGCgCGAGCGCcgcacgccgUCGGCGUCGggcuccugcUCGCa -3'
miRNA:   3'- gagaCG-GCUCGCG---------AGCCGCAGU---------GGCG- -5'
28078 3' -60.3 NC_005887.1 + 9680 0.66 0.374239
Target:  5'- -gUUGCCGaAGCGCgcaCGcGCGaCACCGg -3'
miRNA:   3'- gaGACGGC-UCGCGa--GC-CGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 26086 0.66 0.369095
Target:  5'- aUCUGCUGcaucaGCUCGGCGacggugcccgugcgcUCGCCGg -3'
miRNA:   3'- gAGACGGCucg--CGAGCCGC---------------AGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 26959 0.66 0.365693
Target:  5'- -gCUGcCCGcGCGCgaucagcgCGGCGUCgACCuGCu -3'
miRNA:   3'- gaGAC-GGCuCGCGa-------GCCGCAG-UGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 28211 0.66 0.365693
Target:  5'- ---cGCCGcGCGuCUCGGCGguuuugagCAgCGCg -3'
miRNA:   3'- gagaCGGCuCGC-GAGCCGCa-------GUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 4632 0.67 0.360631
Target:  5'- -cCUGCgCGAauacGCGCUgaaccugaucgccccCGGCGUCGCUuGCa -3'
miRNA:   3'- gaGACG-GCU----CGCGA---------------GCCGCAGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 12308 0.67 0.357283
Target:  5'- ---aGCUG-GCGCUCgccuaugaggguGGCGUCGgCGCg -3'
miRNA:   3'- gagaCGGCuCGCGAG------------CCGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 25887 0.67 0.357283
Target:  5'- -cCUGCCGcGCGgUCGaGCG-CAugcCCGCg -3'
miRNA:   3'- gaGACGGCuCGCgAGC-CGCaGU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 4238 0.67 0.357283
Target:  5'- gCUCgcGCCGA-CGCUCGGC--CGCaCGCa -3'
miRNA:   3'- -GAGa-CGGCUcGCGAGCCGcaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 3618 0.67 0.357283
Target:  5'- ---gGCCGcgcAGCGCuUCGGCcgugaaaaccuGUCGCCGUc -3'
miRNA:   3'- gagaCGGC---UCGCG-AGCCG-----------CAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 20975 0.67 0.357283
Target:  5'- ---cGCUG-GCGCUUGGCGcCACgcuCGCa -3'
miRNA:   3'- gagaCGGCuCGCGAGCCGCaGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 41934 0.67 0.34901
Target:  5'- gCUCgcaGCUGAGCuGCcCGGCGUgcUCGCg -3'
miRNA:   3'- -GAGa--CGGCUCG-CGaGCCGCAguGGCG- -5'
28078 3' -60.3 NC_005887.1 + 22717 0.67 0.34901
Target:  5'- aUC-GCCguGAGCGagaUCGGCGggaCACUGCu -3'
miRNA:   3'- gAGaCGG--CUCGCg--AGCCGCa--GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 24999 0.67 0.340874
Target:  5'- -gUUGCCGAGCGUcagcucgcgcCGGCG--GCCGCc -3'
miRNA:   3'- gaGACGGCUCGCGa---------GCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 5754 0.67 0.340874
Target:  5'- uUCcgGCCGAGgcCGCgaaGGCGcUgGCCGCg -3'
miRNA:   3'- gAGa-CGGCUC--GCGag-CCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 29758 0.67 0.340874
Target:  5'- ---cGCCGAGCGUcgcggccgggUCGGCGgaCACCauGCg -3'
miRNA:   3'- gagaCGGCUCGCG----------AGCCGCa-GUGG--CG- -5'
28078 3' -60.3 NC_005887.1 + 24891 0.67 0.332876
Target:  5'- --aUGCCGcGCGCUCGGUcuUCuuCGCa -3'
miRNA:   3'- gagACGGCuCGCGAGCCGc-AGugGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.