miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 8462 0.66 0.400675
Target:  5'- ----aUCGAGCGCcCGGCGcaACCGCu -3'
miRNA:   3'- gagacGGCUCGCGaGCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 31290 0.66 0.418023
Target:  5'- cCUC-GUCGAGCucgaccgGCaUCGGCG-CACCGg -3'
miRNA:   3'- -GAGaCGGCUCG-------CG-AGCCGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 5683 0.66 0.400675
Target:  5'- ---gGCUGAGgacuaccaGCUCGGCGaCACCGa -3'
miRNA:   3'- gagaCGGCUCg-------CGAGCCGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 13141 0.66 0.400675
Target:  5'- --gUGCCGGGC-CUCGucuCGUCgcuuGCCGCg -3'
miRNA:   3'- gagACGGCUCGcGAGCc--GCAG----UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 27665 0.66 0.418948
Target:  5'- -gCUGCCGcGCGCgCGGCuugaUCGuCUGCa -3'
miRNA:   3'- gaGACGGCuCGCGaGCCGc---AGU-GGCG- -5'
28078 3' -60.3 NC_005887.1 + 12601 0.66 0.418948
Target:  5'- ---gGCCGcGaCGCUCGGCGUgCugaCGCa -3'
miRNA:   3'- gagaCGGCuC-GCGAGCCGCA-Gug-GCG- -5'
28078 3' -60.3 NC_005887.1 + 28319 0.66 0.418948
Target:  5'- -gUUGCUGGaaGCcuguugUCGGCGUCugCGCc -3'
miRNA:   3'- gaGACGGCUcgCG------AGCCGCAGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 41704 0.66 0.418948
Target:  5'- gUCaUGCgCGuGCGCUCGccgcGCGcuuUCAUCGCg -3'
miRNA:   3'- gAG-ACG-GCuCGCGAGC----CGC---AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 22717 0.67 0.34901
Target:  5'- aUC-GCCguGAGCGagaUCGGCGggaCACUGCu -3'
miRNA:   3'- gAGaCGG--CUCGCg--AGCCGCa--GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 20975 0.67 0.357283
Target:  5'- ---cGCUG-GCGCUUGGCGcCACgcuCGCa -3'
miRNA:   3'- gagaCGGCuCGCGAGCCGCaGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 3618 0.67 0.357283
Target:  5'- ---gGCCGcgcAGCGCuUCGGCcgugaaaaccuGUCGCCGUc -3'
miRNA:   3'- gagaCGGC---UCGCG-AGCCG-----------CAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4238 0.67 0.357283
Target:  5'- gCUCgcGCCGA-CGCUCGGC--CGCaCGCa -3'
miRNA:   3'- -GAGa-CGGCUcGCGAGCCGcaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 41934 0.67 0.34901
Target:  5'- gCUCgcaGCUGAGCuGCcCGGCGUgcUCGCg -3'
miRNA:   3'- -GAGa--CGGCUCG-CGaGCCGCAguGGCG- -5'
28078 3' -60.3 NC_005887.1 + 24999 0.67 0.340874
Target:  5'- -gUUGCCGAGCGUcagcucgcgcCGGCG--GCCGCc -3'
miRNA:   3'- gaGACGGCUCGCGa---------GCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 5754 0.67 0.340874
Target:  5'- uUCcgGCCGAGgcCGCgaaGGCGcUgGCCGCg -3'
miRNA:   3'- gAGa-CGGCUC--GCGag-CCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13425 0.67 0.332876
Target:  5'- -gCUGCUGA-CGaCgagCGGCG-CACCGCu -3'
miRNA:   3'- gaGACGGCUcGC-Ga--GCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 36202 0.67 0.325017
Target:  5'- --gUGCCGAGgaaCGaUUCGGCGUCGagcaCGCu -3'
miRNA:   3'- gagACGGCUC---GC-GAGCCGCAGUg---GCG- -5'
28078 3' -60.3 NC_005887.1 + 24891 0.67 0.332876
Target:  5'- --aUGCCGcGCGCUCGGUcuUCuuCGCa -3'
miRNA:   3'- gagACGGCuCGCGAGCCGc-AGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 25887 0.67 0.357283
Target:  5'- -cCUGCCGcGCGgUCGaGCG-CAugcCCGCg -3'
miRNA:   3'- gaGACGGCuCGCgAGC-CGCaGU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 4632 0.67 0.360631
Target:  5'- -cCUGCgCGAauacGCGCUgaaccugaucgccccCGGCGUCGCUuGCa -3'
miRNA:   3'- gaGACG-GCU----CGCGA---------------GCCGCAGUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.