miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 33899 0.71 0.191175
Target:  5'- ---cGCCGGGCGCUCGaucGCGUUGaCGCg -3'
miRNA:   3'- gagaCGGCUCGCGAGC---CGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 22133 0.7 0.201488
Target:  5'- gCUC-GCUGAucGCGCUCGGCuUCAUCGg -3'
miRNA:   3'- -GAGaCGGCU--CGCGAGCCGcAGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 6494 0.7 0.206823
Target:  5'- gUCUGCCGAGCGCaauccgcaGGCGaugaucuaCGCCGa -3'
miRNA:   3'- gAGACGGCUCGCGag------CCGCa-------GUGGCg -5'
28078 3' -60.3 NC_005887.1 + 29885 0.7 0.21228
Target:  5'- ---gGCCGAGCGUaCGGCGuuucuUCACgGCc -3'
miRNA:   3'- gagaCGGCUCGCGaGCCGC-----AGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 11422 0.7 0.216735
Target:  5'- ---cGCCGAGCGCgcugugcacaaGGCGaUGCCGCg -3'
miRNA:   3'- gagaCGGCUCGCGag---------CCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 37766 0.7 0.217861
Target:  5'- aUCUGCgCGGccuGCGcCUCGGCGgcuugCugCGCc -3'
miRNA:   3'- gAGACG-GCU---CGC-GAGCCGCa----GugGCG- -5'
28078 3' -60.3 NC_005887.1 + 41537 0.7 0.223567
Target:  5'- aUCcGCgaGGCGCUCGGCG-CGCaCGCg -3'
miRNA:   3'- gAGaCGgcUCGCGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 24539 0.69 0.235359
Target:  5'- --gUGCuCGAGCGaCUCGGCGaUCAgcccCUGCg -3'
miRNA:   3'- gagACG-GCUCGC-GAGCCGC-AGU----GGCG- -5'
28078 3' -60.3 NC_005887.1 + 14993 0.69 0.235359
Target:  5'- --aUGCCGA-CGCUCGucuGCG-CGCCGCu -3'
miRNA:   3'- gagACGGCUcGCGAGC---CGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 29426 0.69 0.235359
Target:  5'- gCUCgucgGCCGAGUaGUcgUCGGCGUCAggCGCu -3'
miRNA:   3'- -GAGa---CGGCUCG-CG--AGCCGCAGUg-GCG- -5'
28078 3' -60.3 NC_005887.1 + 28722 0.69 0.241449
Target:  5'- gCUCgGCUGAGUGCggccgCcGCG-CGCCGCg -3'
miRNA:   3'- -GAGaCGGCUCGCGa----GcCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 19522 0.69 0.247669
Target:  5'- aUCUGCCgguuGAGCacGUUCGGaugCGCCGCg -3'
miRNA:   3'- gAGACGG----CUCG--CGAGCCgcaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 8413 0.69 0.254021
Target:  5'- gCUC-GCCGAGCGCcgUCGGCagGUCGaCGUc -3'
miRNA:   3'- -GAGaCGGCUCGCG--AGCCG--CAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 14593 0.69 0.260507
Target:  5'- cCUC-GCCGGcGCGCUCGGCaUCGgCCa- -3'
miRNA:   3'- -GAGaCGGCU-CGCGAGCCGcAGU-GGcg -5'
28078 3' -60.3 NC_005887.1 + 27762 0.69 0.267127
Target:  5'- --aUGCCGAGCGCgcCGGCGagguagagCGCCa- -3'
miRNA:   3'- gagACGGCUCGCGa-GCCGCa-------GUGGcg -5'
28078 3' -60.3 NC_005887.1 + 28289 0.69 0.267127
Target:  5'- ---cGCCGAGCGCgcgCaGCGUCGUgGCg -3'
miRNA:   3'- gagaCGGCUCGCGa--GcCGCAGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 1803 0.69 0.267127
Target:  5'- aCUCgUGCgCGAGCGCcagacCGuCGUCGCUGCc -3'
miRNA:   3'- -GAG-ACG-GCUCGCGa----GCcGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13002 0.68 0.273882
Target:  5'- -gCUGCCGGGUuCUCcGCG-UACCGCu -3'
miRNA:   3'- gaGACGGCUCGcGAGcCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 32778 0.68 0.273882
Target:  5'- ---aGCCGGcucguGCGCaggaUCGGCGcgCGCCGCu -3'
miRNA:   3'- gagaCGGCU-----CGCG----AGCCGCa-GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13306 0.68 0.273882
Target:  5'- aUCgGCCaGGCGUUCGGCaaCGCCGg -3'
miRNA:   3'- gAGaCGGcUCGCGAGCCGcaGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.