miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 8462 0.66 0.400675
Target:  5'- ----aUCGAGCGCcCGGCGcaACCGCu -3'
miRNA:   3'- gagacGGCUCGCGaGCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 9680 0.66 0.374239
Target:  5'- -gUUGCCGaAGCGCgcaCGcGCGaCACCGg -3'
miRNA:   3'- gaGACGGC-UCGCGa--GC-CGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 10310 0.66 0.391732
Target:  5'- gUCUG-CGGGCG-UCGGUGcC-CCGCa -3'
miRNA:   3'- gAGACgGCUCGCgAGCCGCaGuGGCG- -5'
28078 3' -60.3 NC_005887.1 + 11296 0.72 0.158656
Target:  5'- cCUCUGCuCGcAGCggccgGCUCGGCagcgagCGCCGCa -3'
miRNA:   3'- -GAGACG-GC-UCG-----CGAGCCGca----GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 11391 0.71 0.181328
Target:  5'- ---aGCCgGAGCGCU-GGCGgccggCGCCGCc -3'
miRNA:   3'- gagaCGG-CUCGCGAgCCGCa----GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 11422 0.7 0.216735
Target:  5'- ---cGCCGAGCGCgcugugcacaaGGCGaUGCCGCg -3'
miRNA:   3'- gagaCGGCUCGCGag---------CCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 12239 0.76 0.079573
Target:  5'- --aUGCaCGGGCGUUCGGCGUaGCCGUc -3'
miRNA:   3'- gagACG-GCUCGCGAGCCGCAgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 12308 0.67 0.357283
Target:  5'- ---aGCUG-GCGCUCgccuaugaggguGGCGUCGgCGCg -3'
miRNA:   3'- gagaCGGCuCGCGAG------------CCGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 12601 0.66 0.418948
Target:  5'- ---gGCCGcGaCGCUCGGCGUgCugaCGCa -3'
miRNA:   3'- gagaCGGCuC-GCGAGCCGCA-Gug-GCG- -5'
28078 3' -60.3 NC_005887.1 + 13002 0.68 0.273882
Target:  5'- -gCUGCCGGGUuCUCcGCG-UACCGCu -3'
miRNA:   3'- gaGACGGCUCGcGAGcCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13141 0.66 0.400675
Target:  5'- --gUGCCGGGC-CUCGucuCGUCgcuuGCCGCg -3'
miRNA:   3'- gagACGGCUCGcGAGCc--GCAG----UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13306 0.68 0.273882
Target:  5'- aUCgGCCaGGCGUUCGGCaaCGCCGg -3'
miRNA:   3'- gAGaCGGcUCGCGAGCCGcaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 13425 0.67 0.332876
Target:  5'- -gCUGCUGA-CGaCgagCGGCG-CACCGCu -3'
miRNA:   3'- gaGACGGCUcGC-Ga--GCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13612 0.68 0.287802
Target:  5'- -gCUGCUGgcAGCGCggcgcgCGGCG--GCCGCa -3'
miRNA:   3'- gaGACGGC--UCGCGa-----GCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 14069 0.68 0.302272
Target:  5'- -gCUG-CGcGCGCUCGGCGU-GCCGa -3'
miRNA:   3'- gaGACgGCuCGCGAGCCGCAgUGGCg -5'
28078 3' -60.3 NC_005887.1 + 14198 0.71 0.174705
Target:  5'- -gCUGUCGGGCGCggccucggacagGGCGgCGCCGCg -3'
miRNA:   3'- gaGACGGCUCGCGag----------CCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 14374 0.68 0.280773
Target:  5'- -cCUGuUCGAGUcgccGCUCGGCG-CGCgCGCg -3'
miRNA:   3'- gaGAC-GGCUCG----CGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 14503 0.66 0.382919
Target:  5'- ---cGCCGcGGUGCUUGGUGgu-CCGCu -3'
miRNA:   3'- gagaCGGC-UCGCGAGCCGCaguGGCG- -5'
28078 3' -60.3 NC_005887.1 + 14593 0.69 0.260507
Target:  5'- cCUC-GCCGGcGCGCUCGGCaUCGgCCa- -3'
miRNA:   3'- -GAGaCGGCU-CGCGAGCCGcAGU-GGcg -5'
28078 3' -60.3 NC_005887.1 + 14993 0.69 0.235359
Target:  5'- --aUGCCGA-CGCUCGucuGCG-CGCCGCu -3'
miRNA:   3'- gagACGGCUcGCGAGC---CGCaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.