Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 35328 | 0.68 | 0.280773 |
Target: 5'- -aCUGCCGcGCGCcgCGGCG--GCCGg -3' miRNA: 3'- gaGACGGCuCGCGa-GCCGCagUGGCg -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 14374 | 0.68 | 0.280773 |
Target: 5'- -cCUGuUCGAGUcgccGCUCGGCG-CGCgCGCg -3' miRNA: 3'- gaGAC-GGCUCG----CGAGCCGCaGUG-GCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 34113 | 0.72 | 0.167401 |
Target: 5'- ---cGCCGAGCGCUCGGCaGaggauuucgauuUCGCCa- -3' miRNA: 3'- gagaCGGCUCGCGAGCCG-C------------AGUGGcg -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 1227 | 0.72 | 0.167401 |
Target: 5'- aUCUGgCGGGCGCUgcgCGGCGcUCAgcaCGCg -3' miRNA: 3'- gAGACgGCUCGCGA---GCCGC-AGUg--GCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 11296 | 0.72 | 0.158656 |
Target: 5'- cCUCUGCuCGcAGCggccgGCUCGGCagcgagCGCCGCa -3' miRNA: 3'- -GAGACG-GC-UCG-----CGAGCCGca----GUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 17267 | 0.72 | 0.146311 |
Target: 5'- aUCgUGCCGGGCGagacgUCgGGCGgCGCCGCg -3' miRNA: 3'- gAG-ACGGCUCGCg----AG-CCGCaGUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 23982 | 0.74 | 0.114369 |
Target: 5'- -aCUGCuCGAGCGCgaggCGGCGcUCgggaaucuccuGCCGCa -3' miRNA: 3'- gaGACG-GCUCGCGa---GCCGC-AG-----------UGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 28548 | 0.74 | 0.105253 |
Target: 5'- ---cGCCGGGCuGCUgaauuuguaGGCGUCGCCGCc -3' miRNA: 3'- gagaCGGCUCG-CGAg--------CCGCAGUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 35859 | 0.76 | 0.07521 |
Target: 5'- -cCUGCgGAuuGCGCUCGGCaGaCACCGCg -3' miRNA: 3'- gaGACGgCU--CGCGAGCCG-CaGUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 33939 | 0.78 | 0.058265 |
Target: 5'- -cCUGCCGAcgGCGCUCGGCGagCACguCGCg -3' miRNA: 3'- gaGACGGCU--CGCGAGCCGCa-GUG--GCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 14198 | 0.71 | 0.174705 |
Target: 5'- -gCUGUCGGGCGCggccucggacagGGCGgCGCCGCg -3' miRNA: 3'- gaGACGGCUCGCGag----------CCGCaGUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 11391 | 0.71 | 0.181328 |
Target: 5'- ---aGCCgGAGCGCU-GGCGgccggCGCCGCc -3' miRNA: 3'- gagaCGG-CUCGCGAgCCGCa----GUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 13306 | 0.68 | 0.273882 |
Target: 5'- aUCgGCCaGGCGUUCGGCaaCGCCGg -3' miRNA: 3'- gAGaCGGcUCGCGAGCCGcaGUGGCg -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 32778 | 0.68 | 0.273882 |
Target: 5'- ---aGCCGGcucguGCGCaggaUCGGCGcgCGCCGCu -3' miRNA: 3'- gagaCGGCU-----CGCG----AGCCGCa-GUGGCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 27762 | 0.69 | 0.267127 |
Target: 5'- --aUGCCGAGCGCgcCGGCGagguagagCGCCa- -3' miRNA: 3'- gagACGGCUCGCGa-GCCGCa-------GUGGcg -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 28289 | 0.69 | 0.267127 |
Target: 5'- ---cGCCGAGCGCgcgCaGCGUCGUgGCg -3' miRNA: 3'- gagaCGGCUCGCGa--GcCGCAGUGgCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 29426 | 0.69 | 0.235359 |
Target: 5'- gCUCgucgGCCGAGUaGUcgUCGGCGUCAggCGCu -3' miRNA: 3'- -GAGa---CGGCUCG-CG--AGCCGCAGUg-GCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 41537 | 0.7 | 0.223567 |
Target: 5'- aUCcGCgaGGCGCUCGGCG-CGCaCGCg -3' miRNA: 3'- gAGaCGgcUCGCGAGCCGCaGUG-GCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 29885 | 0.7 | 0.21228 |
Target: 5'- ---gGCCGAGCGUaCGGCGuuucuUCACgGCc -3' miRNA: 3'- gagaCGGCUCGCGaGCCGC-----AGUGgCG- -5' |
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28078 | 3' | -60.3 | NC_005887.1 | + | 22133 | 0.7 | 0.201488 |
Target: 5'- gCUC-GCUGAucGCGCUCGGCuUCAUCGg -3' miRNA: 3'- -GAGaCGGCU--CGCGAGCCGcAGUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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