miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 35328 0.68 0.280773
Target:  5'- -aCUGCCGcGCGCcgCGGCG--GCCGg -3'
miRNA:   3'- gaGACGGCuCGCGa-GCCGCagUGGCg -5'
28078 3' -60.3 NC_005887.1 + 29885 0.7 0.21228
Target:  5'- ---gGCCGAGCGUaCGGCGuuucuUCACgGCc -3'
miRNA:   3'- gagaCGGCUCGCGaGCCGC-----AGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 41537 0.7 0.223567
Target:  5'- aUCcGCgaGGCGCUCGGCG-CGCaCGCg -3'
miRNA:   3'- gAGaCGgcUCGCGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 29426 0.69 0.235359
Target:  5'- gCUCgucgGCCGAGUaGUcgUCGGCGUCAggCGCu -3'
miRNA:   3'- -GAGa---CGGCUCG-CG--AGCCGCAGUg-GCG- -5'
28078 3' -60.3 NC_005887.1 + 28289 0.69 0.267127
Target:  5'- ---cGCCGAGCGCgcgCaGCGUCGUgGCg -3'
miRNA:   3'- gagaCGGCUCGCGa--GcCGCAGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 27762 0.69 0.267127
Target:  5'- --aUGCCGAGCGCgcCGGCGagguagagCGCCa- -3'
miRNA:   3'- gagACGGCUCGCGa-GCCGCa-------GUGGcg -5'
28078 3' -60.3 NC_005887.1 + 32778 0.68 0.273882
Target:  5'- ---aGCCGGcucguGCGCaggaUCGGCGcgCGCCGCu -3'
miRNA:   3'- gagaCGGCU-----CGCG----AGCCGCa-GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 13306 0.68 0.273882
Target:  5'- aUCgGCCaGGCGUUCGGCaaCGCCGg -3'
miRNA:   3'- gAGaCGGcUCGCGAGCCGcaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 14374 0.68 0.280773
Target:  5'- -cCUGuUCGAGUcgccGCUCGGCG-CGCgCGCg -3'
miRNA:   3'- gaGAC-GGCUCG----CGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 22133 0.7 0.201488
Target:  5'- gCUC-GCUGAucGCGCUCGGCuUCAUCGg -3'
miRNA:   3'- -GAGaCGGCU--CGCGAGCCGcAGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 11391 0.71 0.181328
Target:  5'- ---aGCCgGAGCGCU-GGCGgccggCGCCGCc -3'
miRNA:   3'- gagaCGG-CUCGCGAgCCGCa----GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 14198 0.71 0.174705
Target:  5'- -gCUGUCGGGCGCggccucggacagGGCGgCGCCGCg -3'
miRNA:   3'- gaGACGGCUCGCGag----------CCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 33939 0.78 0.058265
Target:  5'- -cCUGCCGAcgGCGCUCGGCGagCACguCGCg -3'
miRNA:   3'- gaGACGGCU--CGCGAGCCGCa-GUG--GCG- -5'
28078 3' -60.3 NC_005887.1 + 35859 0.76 0.07521
Target:  5'- -cCUGCgGAuuGCGCUCGGCaGaCACCGCg -3'
miRNA:   3'- gaGACGgCU--CGCGAGCCG-CaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 28548 0.74 0.105253
Target:  5'- ---cGCCGGGCuGCUgaauuuguaGGCGUCGCCGCc -3'
miRNA:   3'- gagaCGGCUCG-CGAg--------CCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 23982 0.74 0.114369
Target:  5'- -aCUGCuCGAGCGCgaggCGGCGcUCgggaaucuccuGCCGCa -3'
miRNA:   3'- gaGACG-GCUCGCGa---GCCGC-AG-----------UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 17267 0.72 0.146311
Target:  5'- aUCgUGCCGGGCGagacgUCgGGCGgCGCCGCg -3'
miRNA:   3'- gAG-ACGGCUCGCg----AG-CCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 11296 0.72 0.158656
Target:  5'- cCUCUGCuCGcAGCggccgGCUCGGCagcgagCGCCGCa -3'
miRNA:   3'- -GAGACG-GC-UCG-----CGAGCCGca----GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1227 0.72 0.167401
Target:  5'- aUCUGgCGGGCGCUgcgCGGCGcUCAgcaCGCg -3'
miRNA:   3'- gAGACgGCUCGCGA---GCCGC-AGUg--GCG- -5'
28078 3' -60.3 NC_005887.1 + 34113 0.72 0.167401
Target:  5'- ---cGCCGAGCGCUCGGCaGaggauuucgauuUCGCCa- -3'
miRNA:   3'- gagaCGGCUCGCGAGCCG-C------------AGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.