miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 41704 0.66 0.418948
Target:  5'- gUCaUGCgCGuGCGCUCGccgcGCGcuuUCAUCGCg -3'
miRNA:   3'- gAG-ACG-GCuCGCGAGC----CGC---AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1539 0.67 0.325017
Target:  5'- cCUCgucaucGUCGAGCGg-C-GCGUCGCCGCc -3'
miRNA:   3'- -GAGa-----CGGCUCGCgaGcCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 7015 0.68 0.309715
Target:  5'- gCUCgugGCCGGcCGCcgCGGCG-CGCgGCa -3'
miRNA:   3'- -GAGa--CGGCUcGCGa-GCCGCaGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 8242 1.11 0.000185
Target:  5'- cCUCUGCCGAGCGCUCGGCGUCACCGCu -3'
miRNA:   3'- -GAGACGGCUCGCGAGCCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6890 0.66 0.409748
Target:  5'- -cCUGCuCGAcaacgaacGC-CUCGGCGUCAUcuaCGCg -3'
miRNA:   3'- gaGACG-GCU--------CGcGAGCCGCAGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 33468 0.66 0.400675
Target:  5'- gUCcG-CGAGCGCguaCGGCGUCGCgaucucgacgggCGCg -3'
miRNA:   3'- gAGaCgGCUCGCGa--GCCGCAGUG------------GCG- -5'
28078 3' -60.3 NC_005887.1 + 39318 0.66 0.390845
Target:  5'- gUCauugGCCGAGCaugGCUuugcccgCGGCGcUgGCCGCa -3'
miRNA:   3'- gAGa---CGGCUCG---CGA-------GCCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39141 0.66 0.382919
Target:  5'- uUCUG-CGAGCGCUCgcGGCccuucUCGCUGUc -3'
miRNA:   3'- gAGACgGCUCGCGAG--CCGc----AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 26086 0.66 0.369095
Target:  5'- aUCUGCUGcaucaGCUCGGCGacggugcccgugcgcUCGCCGg -3'
miRNA:   3'- gAGACGGCucg--CGAGCCGC---------------AGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 29758 0.67 0.340874
Target:  5'- ---cGCCGAGCGUcgcggccgggUCGGCGgaCACCauGCg -3'
miRNA:   3'- gagaCGGCUCGCG----------AGCCGCa-GUGG--CG- -5'
28078 3' -60.3 NC_005887.1 + 4632 0.67 0.360631
Target:  5'- -cCUGCgCGAauacGCGCUgaaccugaucgccccCGGCGUCGCUuGCa -3'
miRNA:   3'- gaGACG-GCU----CGCGA---------------GCCGCAGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 9680 0.66 0.374239
Target:  5'- -gUUGCCGaAGCGCgcaCGcGCGaCACCGg -3'
miRNA:   3'- gaGACGGC-UCGCGa--GC-CGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 25047 0.66 0.418948
Target:  5'- ---cGCgGuGCGCcgaacCGGCGUUugCGCg -3'
miRNA:   3'- gagaCGgCuCGCGa----GCCGCAGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 25887 0.67 0.357283
Target:  5'- -cCUGCCGcGCGgUCGaGCG-CAugcCCGCg -3'
miRNA:   3'- gaGACGGCuCGCgAGC-CGCaGU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 36936 0.66 0.409748
Target:  5'- ---cGCCGGuCGCUgCGGCGcCGCCcGCc -3'
miRNA:   3'- gagaCGGCUcGCGA-GCCGCaGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 40869 0.66 0.374239
Target:  5'- ---cGCgCGAGCGCcgcacgccgUCGGCGUCGggcuccugcUCGCa -3'
miRNA:   3'- gagaCG-GCUCGCG---------AGCCGCAGU---------GGCG- -5'
28078 3' -60.3 NC_005887.1 + 12308 0.67 0.357283
Target:  5'- ---aGCUG-GCGCUCgccuaugaggguGGCGUCGgCGCg -3'
miRNA:   3'- gagaCGGCuCGCGAG------------CCGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 17467 0.67 0.325017
Target:  5'- ---aGaCCGAGCGCgCGGCaUCgGCCGCc -3'
miRNA:   3'- gagaC-GGCUCGCGaGCCGcAG-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 27480 0.66 0.409748
Target:  5'- uUCUGCCGcgcgguGCGCgcuguugcugCGGUGUgCAcgcCCGCg -3'
miRNA:   3'- gAGACGGCu-----CGCGa---------GCCGCA-GU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 10310 0.66 0.391732
Target:  5'- gUCUG-CGGGCG-UCGGUGcC-CCGCa -3'
miRNA:   3'- gAGACgGCUCGCgAGCCGCaGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.