Results 1 - 20 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 8242 | 1.11 | 0.000185 |
Target: 5'- cCUCUGCCGAGCGCUCGGCGUCACCGCu -3' miRNA: 3'- -GAGACGGCUCGCGAGCCGCAGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 30366 | 0.85 | 0.017339 |
Target: 5'- --aUGCCGAGCucgguguaccGCUCGGCGUCGCCGUc -3' miRNA: 3'- gagACGGCUCG----------CGAGCCGCAGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 33939 | 0.78 | 0.058265 |
Target: 5'- -cCUGCCGAcgGCGCUCGGCGagCACguCGCg -3' miRNA: 3'- gaGACGGCU--CGCGAGCCGCa-GUG--GCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 35859 | 0.76 | 0.07521 |
Target: 5'- -cCUGCgGAuuGCGCUCGGCaGaCACCGCg -3' miRNA: 3'- gaGACGgCU--CGCGAGCCG-CaGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 1398 | 0.76 | 0.079349 |
Target: 5'- ---cGCCGAagcggucgagcauGCGCUCGGCGUUGCCGa -3' miRNA: 3'- gagaCGGCU-------------CGCGAGCCGCAGUGGCg -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 12239 | 0.76 | 0.079573 |
Target: 5'- --aUGCaCGGGCGUUCGGCGUaGCCGUc -3' miRNA: 3'- gagACG-GCUCGCGAGCCGCAgUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 6782 | 0.75 | 0.09956 |
Target: 5'- ---gGCCGuGUGCcCGGCGcUCGCCGCa -3' miRNA: 3'- gagaCGGCuCGCGaGCCGC-AGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 28548 | 0.74 | 0.105253 |
Target: 5'- ---cGCCGGGCuGCUgaauuuguaGGCGUCGCCGCc -3' miRNA: 3'- gagaCGGCUCG-CGAg--------CCGCAGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 23982 | 0.74 | 0.114369 |
Target: 5'- -aCUGCuCGAGCGCgaggCGGCGcUCgggaaucuccuGCCGCa -3' miRNA: 3'- gaGACG-GCUCGCGa---GCCGC-AG-----------UGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 6028 | 0.73 | 0.124218 |
Target: 5'- -cCUGgaUCGAGUGCgCGGCGUCgACCGCc -3' miRNA: 3'- gaGAC--GGCUCGCGaGCCGCAG-UGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 17390 | 0.73 | 0.142395 |
Target: 5'- cCUCgcgGCCGcGCGCaaGGCGgcccgcgcgCACCGCg -3' miRNA: 3'- -GAGa--CGGCuCGCGagCCGCa--------GUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 17267 | 0.72 | 0.146311 |
Target: 5'- aUCgUGCCGGGCGagacgUCgGGCGgCGCCGCg -3' miRNA: 3'- gAG-ACGGCUCGCg----AG-CCGCaGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 11296 | 0.72 | 0.158656 |
Target: 5'- cCUCUGCuCGcAGCggccgGCUCGGCagcgagCGCCGCa -3' miRNA: 3'- -GAGACG-GC-UCG-----CGAGCCGca----GUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 34113 | 0.72 | 0.167401 |
Target: 5'- ---cGCCGAGCGCUCGGCaGaggauuucgauuUCGCCa- -3' miRNA: 3'- gagaCGGCUCGCGAGCCG-C------------AGUGGcg -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 1227 | 0.72 | 0.167401 |
Target: 5'- aUCUGgCGGGCGCUgcgCGGCGcUCAgcaCGCg -3' miRNA: 3'- gAGACgGCUCGCGA---GCCGC-AGUg--GCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 14198 | 0.71 | 0.174705 |
Target: 5'- -gCUGUCGGGCGCggccucggacagGGCGgCGCCGCg -3' miRNA: 3'- gaGACGGCUCGCGag----------CCGCaGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 29977 | 0.71 | 0.176106 |
Target: 5'- gUUUGCgCGGuGCuGCUCGGCcugccacGUCACCGCc -3' miRNA: 3'- gAGACG-GCU-CG-CGAGCCG-------CAGUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 36183 | 0.71 | 0.181328 |
Target: 5'- uUCggGUCGAgGCGCUUGGCGaCAuCCGCc -3' miRNA: 3'- gAGa-CGGCU-CGCGAGCCGCaGU-GGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 11391 | 0.71 | 0.181328 |
Target: 5'- ---aGCCgGAGCGCU-GGCGgccggCGCCGCc -3' miRNA: 3'- gagaCGG-CUCGCGAgCCGCa----GUGGCG- -5' |
|||||||
28078 | 3' | -60.3 | NC_005887.1 | + | 18790 | 0.71 | 0.181328 |
Target: 5'- -aCUGCCGGccggcgauGCGggCGGCGUCAgCGUa -3' miRNA: 3'- gaGACGGCU--------CGCgaGCCGCAGUgGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home