miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 1227 0.72 0.167401
Target:  5'- aUCUGgCGGGCGCUgcgCGGCGcUCAgcaCGCg -3'
miRNA:   3'- gAGACgGCUCGCGA---GCCGC-AGUg--GCG- -5'
28078 3' -60.3 NC_005887.1 + 1398 0.76 0.079349
Target:  5'- ---cGCCGAagcggucgagcauGCGCUCGGCGUUGCCGa -3'
miRNA:   3'- gagaCGGCU-------------CGCGAGCCGCAGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 1539 0.67 0.325017
Target:  5'- cCUCgucaucGUCGAGCGg-C-GCGUCGCCGCc -3'
miRNA:   3'- -GAGa-----CGGCUCGCgaGcCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1803 0.69 0.267127
Target:  5'- aCUCgUGCgCGAGCGCcagacCGuCGUCGCUGCc -3'
miRNA:   3'- -GAG-ACG-GCUCGCGa----GCcGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 3618 0.67 0.357283
Target:  5'- ---gGCCGcgcAGCGCuUCGGCcgugaaaaccuGUCGCCGUc -3'
miRNA:   3'- gagaCGGC---UCGCG-AGCCG-----------CAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4238 0.67 0.357283
Target:  5'- gCUCgcGCCGA-CGCUCGGC--CGCaCGCa -3'
miRNA:   3'- -GAGa-CGGCUcGCGAGCCGcaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 4476 0.66 0.391732
Target:  5'- -gCUGCCGcgaaGGUGCcgaaCGGCGcgcgCAUCGCg -3'
miRNA:   3'- gaGACGGC----UCGCGa---GCCGCa---GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4619 0.66 0.391732
Target:  5'- gCUC-GCCGcGGCGC-CGGUG--GCCGCc -3'
miRNA:   3'- -GAGaCGGC-UCGCGaGCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4632 0.67 0.360631
Target:  5'- -cCUGCgCGAauacGCGCUgaaccugaucgccccCGGCGUCGCUuGCa -3'
miRNA:   3'- gaGACG-GCU----CGCGA---------------GCCGCAGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 5147 0.66 0.391732
Target:  5'- -gCUGcCCGA-CG-UCGGCG-CGCCGCu -3'
miRNA:   3'- gaGAC-GGCUcGCgAGCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 5683 0.66 0.400675
Target:  5'- ---gGCUGAGgacuaccaGCUCGGCGaCACCGa -3'
miRNA:   3'- gagaCGGCUCg-------CGAGCCGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 5754 0.67 0.340874
Target:  5'- uUCcgGCCGAGgcCGCgaaGGCGcUgGCCGCg -3'
miRNA:   3'- gAGa-CGGCUC--GCGag-CCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6028 0.73 0.124218
Target:  5'- -cCUGgaUCGAGUGCgCGGCGUCgACCGCc -3'
miRNA:   3'- gaGAC--GGCUCGCGaGCCGCAG-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6494 0.7 0.206823
Target:  5'- gUCUGCCGAGCGCaauccgcaGGCGaugaucuaCGCCGa -3'
miRNA:   3'- gAGACGGCUCGCGag------CCGCa-------GUGGCg -5'
28078 3' -60.3 NC_005887.1 + 6782 0.75 0.09956
Target:  5'- ---gGCCGuGUGCcCGGCGcUCGCCGCa -3'
miRNA:   3'- gagaCGGCuCGCGaGCCGC-AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6890 0.66 0.409748
Target:  5'- -cCUGCuCGAcaacgaacGC-CUCGGCGUCAUcuaCGCg -3'
miRNA:   3'- gaGACG-GCU--------CGcGAGCCGCAGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 6915 0.66 0.382919
Target:  5'- ---cGCCGAGCGaaucccgcaaCUCGGCauggGCCGCg -3'
miRNA:   3'- gagaCGGCUCGC----------GAGCCGcag-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 7015 0.68 0.309715
Target:  5'- gCUCgugGCCGGcCGCcgCGGCG-CGCgGCa -3'
miRNA:   3'- -GAGa--CGGCUcGCGa-GCCGCaGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 8242 1.11 0.000185
Target:  5'- cCUCUGCCGAGCGCUCGGCGUCACCGCu -3'
miRNA:   3'- -GAGACGGCUCGCGAGCCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 8413 0.69 0.254021
Target:  5'- gCUC-GCCGAGCGCcgUCGGCagGUCGaCGUc -3'
miRNA:   3'- -GAGaCGGCUCGCG--AGCCG--CAGUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.