miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 41934 0.67 0.34901
Target:  5'- gCUCgcaGCUGAGCuGCcCGGCGUgcUCGCg -3'
miRNA:   3'- -GAGa--CGGCUCG-CGaGCCGCAguGGCG- -5'
28078 3' -60.3 NC_005887.1 + 41704 0.66 0.418948
Target:  5'- gUCaUGCgCGuGCGCUCGccgcGCGcuuUCAUCGCg -3'
miRNA:   3'- gAG-ACG-GCuCGCGAGC----CGC---AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 41537 0.7 0.223567
Target:  5'- aUCcGCgaGGCGCUCGGCG-CGCaCGCg -3'
miRNA:   3'- gAGaCGgcUCGCGAGCCGCaGUG-GCG- -5'
28078 3' -60.3 NC_005887.1 + 40869 0.66 0.374239
Target:  5'- ---cGCgCGAGCGCcgcacgccgUCGGCGUCGggcuccugcUCGCa -3'
miRNA:   3'- gagaCG-GCUCGCG---------AGCCGCAGU---------GGCG- -5'
28078 3' -60.3 NC_005887.1 + 40781 0.66 0.375101
Target:  5'- ---cGCCGAGCcgGCggucgagguucguggCGGCGacgCGCCGCu -3'
miRNA:   3'- gagaCGGCUCG--CGa--------------GCCGCa--GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39927 0.68 0.294968
Target:  5'- aUCgaGCCGGGCGCgUCGacgacGCG-CAUCGCg -3'
miRNA:   3'- gAGa-CGGCUCGCG-AGC-----CGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39318 0.66 0.390845
Target:  5'- gUCauugGCCGAGCaugGCUuugcccgCGGCGcUgGCCGCa -3'
miRNA:   3'- gAGa---CGGCUCG---CGA-------GCCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39141 0.66 0.382919
Target:  5'- uUCUG-CGAGCGCUCgcGGCccuucUCGCUGUc -3'
miRNA:   3'- gAGACgGCUCGCGAG--CCGc----AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 38160 0.66 0.391732
Target:  5'- aUCagGCCGAGCGCgaaauaggCGGUGUgcagCAUgGCc -3'
miRNA:   3'- gAGa-CGGCUCGCGa-------GCCGCA----GUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 37766 0.7 0.217861
Target:  5'- aUCUGCgCGGccuGCGcCUCGGCGgcuugCugCGCc -3'
miRNA:   3'- gAGACG-GCU---CGC-GAGCCGCa----GugGCG- -5'
28078 3' -60.3 NC_005887.1 + 36936 0.66 0.409748
Target:  5'- ---cGCCGGuCGCUgCGGCGcCGCCcGCc -3'
miRNA:   3'- gagaCGGCUcGCGA-GCCGCaGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 36293 0.68 0.287802
Target:  5'- aCUCguccgguugGCCGAucuGCGCggCGGuCGaCGCCGCg -3'
miRNA:   3'- -GAGa--------CGGCU---CGCGa-GCC-GCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 36202 0.67 0.325017
Target:  5'- --gUGCCGAGgaaCGaUUCGGCGUCGagcaCGCu -3'
miRNA:   3'- gagACGGCUC---GC-GAGCCGCAGUg---GCG- -5'
28078 3' -60.3 NC_005887.1 + 36183 0.71 0.181328
Target:  5'- uUCggGUCGAgGCGCUUGGCGaCAuCCGCc -3'
miRNA:   3'- gAGa-CGGCU-CGCGAGCCGCaGU-GGCG- -5'
28078 3' -60.3 NC_005887.1 + 35859 0.76 0.07521
Target:  5'- -cCUGCgGAuuGCGCUCGGCaGaCACCGCg -3'
miRNA:   3'- gaGACGgCU--CGCGAGCCG-CaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 35328 0.68 0.280773
Target:  5'- -aCUGCCGcGCGCcgCGGCG--GCCGg -3'
miRNA:   3'- gaGACGGCuCGCGa-GCCGCagUGGCg -5'
28078 3' -60.3 NC_005887.1 + 34113 0.72 0.167401
Target:  5'- ---cGCCGAGCGCUCGGCaGaggauuucgauuUCGCCa- -3'
miRNA:   3'- gagaCGGCUCGCGAGCCG-C------------AGUGGcg -5'
28078 3' -60.3 NC_005887.1 + 33939 0.78 0.058265
Target:  5'- -cCUGCCGAcgGCGCUCGGCGagCACguCGCg -3'
miRNA:   3'- gaGACGGCU--CGCGAGCCGCa-GUG--GCG- -5'
28078 3' -60.3 NC_005887.1 + 33899 0.71 0.191175
Target:  5'- ---cGCCGGGCGCUCGaucGCGUUGaCGCg -3'
miRNA:   3'- gagaCGGCUCGCGAGC---CGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 33878 0.68 0.294968
Target:  5'- ---aGCCGAcaGCGCUC--CGUCGCCGUa -3'
miRNA:   3'- gagaCGGCU--CGCGAGccGCAGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.