miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 3' -61.6 NC_005887.1 + 5089 0.67 0.269771
Target:  5'- uCCCGagaaauccagcgacgUGCCGCCgGguGUCgagcucaAGCCGUg -3'
miRNA:   3'- -GGGCa--------------ACGGCGGgCguCAG-------UCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 15198 0.67 0.269771
Target:  5'- aCCCG----CGCCCGUGGccguUCGGCCGCGu -3'
miRNA:   3'- -GGGCaacgGCGGGCGUC----AGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 31252 0.67 0.26977
Target:  5'- aCCGUU-CUGCCaccaGUAcucGUCGGCCGCGu -3'
miRNA:   3'- gGGCAAcGGCGGg---CGU---CAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 23431 0.67 0.26977
Target:  5'- gCUCGUcgcaGCCGCCCGCcaUCccGCCGCu -3'
miRNA:   3'- -GGGCAa---CGGCGGGCGucAGu-CGGCGu -5'
28079 3' -61.6 NC_005887.1 + 26307 0.68 0.263129
Target:  5'- -aUGUUGCCGCCguccUGCAGguucaGGCCGUg -3'
miRNA:   3'- ggGCAACGGCGG----GCGUCag---UCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 25393 0.68 0.263129
Target:  5'- gCCGacaUUGCCGCCCGCgcGGUUgaAGCgcucaCGCAu -3'
miRNA:   3'- gGGC---AACGGCGGGCG--UCAG--UCG-----GCGU- -5'
28079 3' -61.6 NC_005887.1 + 25435 0.68 0.256621
Target:  5'- gCCCGUcgucuUGCCGaUCUGC--UCGGCUGCAg -3'
miRNA:   3'- -GGGCA-----ACGGC-GGGCGucAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 1772 0.68 0.256621
Target:  5'- cCUCGacaUGCuCGaCCUGCGcGUCGGCCGCu -3'
miRNA:   3'- -GGGCa--ACG-GC-GGGCGU-CAGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 10300 0.68 0.250245
Target:  5'- uCCCGUUuCCGUCUGCGggcGUCGGugccCCGCAc -3'
miRNA:   3'- -GGGCAAcGGCGGGCGU---CAGUC----GGCGU- -5'
28079 3' -61.6 NC_005887.1 + 16350 0.68 0.244001
Target:  5'- cCCCGacGCCGCCCGUga--AGCUGUAc -3'
miRNA:   3'- -GGGCaaCGGCGGGCGucagUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 9032 0.68 0.237886
Target:  5'- gCCCGUgacguuugucgGCgGCCCGUucgCGGCCGUg -3'
miRNA:   3'- -GGGCAa----------CGgCGGGCGucaGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 15232 0.68 0.237886
Target:  5'- gCCGacuacaacgGCgGCCCgaaGCAGgCAGCCGCAg -3'
miRNA:   3'- gGGCaa-------CGgCGGG---CGUCaGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 5500 0.68 0.231901
Target:  5'- aCCG--GCCGCagcaccggCCGCAGcacCGGCCGCAg -3'
miRNA:   3'- gGGCaaCGGCG--------GGCGUCa--GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 22342 0.69 0.22031
Target:  5'- -gUGUUGUCGCCCugcaugaugauGCAGUCuccGGUCGCAu -3'
miRNA:   3'- ggGCAACGGCGGG-----------CGUCAG---UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 18364 0.69 0.209218
Target:  5'- uCCCGagcGCCGCCUcgcgcucgaGCAGUgGGCCGa- -3'
miRNA:   3'- -GGGCaa-CGGCGGG---------CGUCAgUCGGCgu -5'
28079 3' -61.6 NC_005887.1 + 37832 0.69 0.19861
Target:  5'- aCCGggacGCCG-CCGUAGUCGGCgaGCAg -3'
miRNA:   3'- gGGCaa--CGGCgGGCGUCAGUCGg-CGU- -5'
28079 3' -61.6 NC_005887.1 + 27128 0.69 0.198092
Target:  5'- gCCGUUGUagucggcgaucauCGCCUGCAGguuGCCGCc -3'
miRNA:   3'- gGGCAACG-------------GCGGGCGUCaguCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 36947 0.69 0.193484
Target:  5'- -gCGgcGCCGCCCGcCGGUucacCGGUCGCGc -3'
miRNA:   3'- ggGCaaCGGCGGGC-GUCA----GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 421 0.7 0.178796
Target:  5'- gCCGc-GCCGCCCGCuGUU-GCUGCGc -3'
miRNA:   3'- gGGCaaCGGCGGGCGuCAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 23555 0.7 0.174124
Target:  5'- gCUGacGCCGCCCGCAucGcCGGCCgGCAg -3'
miRNA:   3'- gGGCaaCGGCGGGCGU--CaGUCGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.