miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 24954 0.67 0.499601
Target:  5'- --cGCGCGGGCCGCcuuGCGCg----- -3'
miRNA:   3'- guaCGCGUUCGGCGcu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 164 0.67 0.543629
Target:  5'- aAUGCGaCGAGCCaGCGcGCGC-GAAu- -3'
miRNA:   3'- gUACGC-GUUCGG-CGCuCGCGaCUUua -5'
28079 5' -55.1 NC_005887.1 + 17208 0.67 0.541395
Target:  5'- aAUGUGCucgacgaccugcAGCUGCG-GCGCUGGAu- -3'
miRNA:   3'- gUACGCGu-----------UCGGCGCuCGCGACUUua -5'
28079 5' -55.1 NC_005887.1 + 30959 0.67 0.53249
Target:  5'- --gGCGCcGGCCGCcAGCGCUc---- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 1080 0.67 0.510469
Target:  5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3'
miRNA:   3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 27719 0.67 0.499601
Target:  5'- --cGCGCcggcuGCCGUGAGCGCg----- -3'
miRNA:   3'- guaCGCGuu---CGGCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 2483 0.68 0.488837
Target:  5'- gAUGCGCGAGgCGCucAGCGgUGAGc- -3'
miRNA:   3'- gUACGCGUUCgGCGc-UCGCgACUUua -5'
28079 5' -55.1 NC_005887.1 + 37550 0.69 0.426744
Target:  5'- -cUGCGCGAGauCCGCGAGCacggccucgccgGCUGGc-- -3'
miRNA:   3'- guACGCGUUC--GGCGCUCG------------CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 11867 0.69 0.425749
Target:  5'- gGUGCGCAacgcacgGGCCGCGucGCGCa----- -3'
miRNA:   3'- gUACGCGU-------UCGGCGCu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 23960 0.67 0.543629
Target:  5'- --gGCGUAGGCCaucggguucGCGAGCGCcGGc-- -3'
miRNA:   3'- guaCGCGUUCGG---------CGCUCGCGaCUuua -5'
28079 5' -55.1 NC_005887.1 + 37690 0.67 0.543629
Target:  5'- -cUGCGCAgcGGuCUGCGcGuCGCUGAGAUc -3'
miRNA:   3'- guACGCGU--UC-GGCGCuC-GCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 39346 0.67 0.543629
Target:  5'- --gGCGCuGGCCGCaGGCGCguUGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCG--ACUuua -5'
28079 5' -55.1 NC_005887.1 + 8085 1.05 0.001114
Target:  5'- gCAUGCGCAAGCCGCGAGCGCUGAAAUc -3'
miRNA:   3'- -GUACGCGUUCGGCGCUCGCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 9753 0.66 0.611738
Target:  5'- uCGUGUGCGGGCUGCacguGCaCUGGAAc -3'
miRNA:   3'- -GUACGCGUUCGGCGcu--CGcGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 27474 0.66 0.611738
Target:  5'- --gGCGCAuucuGCCGCGcggugcGCGCUGuuGc -3'
miRNA:   3'- guaCGCGUu---CGGCGCu-----CGCGACuuUa -5'
28079 5' -55.1 NC_005887.1 + 18976 0.66 0.611738
Target:  5'- --aGCGCGAGCagcaaaagcaucUGCGAGCGCcGcgGUg -3'
miRNA:   3'- guaCGCGUUCG------------GCGCUCGCGaCuuUA- -5'
28079 5' -55.1 NC_005887.1 + 40138 0.66 0.60028
Target:  5'- gAUGCGCcAGCCGCccaucgguuuGCGCUGc--- -3'
miRNA:   3'- gUACGCGuUCGGCGcu--------CGCGACuuua -5'
28079 5' -55.1 NC_005887.1 + 4138 0.66 0.588852
Target:  5'- --cGCGCAAgGCUGCGcGCGaCUGGc-- -3'
miRNA:   3'- guaCGCGUU-CGGCGCuCGC-GACUuua -5'
28079 5' -55.1 NC_005887.1 + 6295 0.66 0.587711
Target:  5'- gCGUGCGCGAGCgcgucgaggccuUGCGccucgccGGCGCcGAGGUg -3'
miRNA:   3'- -GUACGCGUUCG------------GCGC-------UCGCGaCUUUA- -5'
28079 5' -55.1 NC_005887.1 + 30629 0.66 0.577463
Target:  5'- uCGUGCGC--GCCGUGcGCGCggcGAAGc -3'
miRNA:   3'- -GUACGCGuuCGGCGCuCGCGa--CUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.