Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28079 | 5' | -55.1 | NC_005887.1 | + | 22977 | 0.66 | 0.611738 |
Target: 5'- -cUGCGCGAGCauggCGCGuuGCcGCUGAu-- -3' miRNA: 3'- guACGCGUUCG----GCGCu-CG-CGACUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 7213 | 0.66 | 0.554843 |
Target: 5'- gCGUGCGCAGGCgcugucggCGuCGGGCGCa----- -3' miRNA: 3'- -GUACGCGUUCG--------GC-GCUCGCGacuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 4592 | 0.66 | 0.577463 |
Target: 5'- --gGCGCAGGCCGCGcAGaUGCa----- -3' miRNA: 3'- guaCGCGUUCGGCGC-UC-GCGacuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 18144 | 0.66 | 0.577463 |
Target: 5'- --aGCGCGGGCCGCcGAcgucGUGCcGAAGc -3' miRNA: 3'- guaCGCGUUCGGCG-CU----CGCGaCUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 27021 | 0.66 | 0.577463 |
Target: 5'- uGUGCGCAAccuCgGCGAGCGCg----- -3' miRNA: 3'- gUACGCGUUc--GgCGCUCGCGacuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 5827 | 0.66 | 0.588852 |
Target: 5'- gUcgGCGCGGGUCGCGaAGgGC-GAAGc -3' miRNA: 3'- -GuaCGCGUUCGGCGC-UCgCGaCUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 38230 | 0.66 | 0.599136 |
Target: 5'- -uUGCGCGuGGCCGggaugguCGAGCGCUcGAu-- -3' miRNA: 3'- guACGCGU-UCGGC-------GCUCGCGA-CUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 11630 | 0.66 | 0.60028 |
Target: 5'- gCGUGCGCAAuGCCGagcuCGAcGCGUUGcAGAc -3' miRNA: 3'- -GUACGCGUU-CGGC----GCU-CGCGAC-UUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 27653 | 0.66 | 0.60028 |
Target: 5'- uGUGCGCGcugagcuGCCGCGcGCGCg----- -3' miRNA: 3'- gUACGCGUu------CGGCGCuCGCGacuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 37008 | 0.67 | 0.548106 |
Target: 5'- --cGCGCAGGCCGUacgcgaacacgucggGAuacuggucgGCGCUGAGc- -3' miRNA: 3'- guaCGCGUUCGGCG---------------CU---------CGCGACUUua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 24429 | 0.67 | 0.543629 |
Target: 5'- uCGUGCGCAcgcaGGUCGCGAGCag-GAc-- -3' miRNA: 3'- -GUACGCGU----UCGGCGCUCGcgaCUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 12948 | 0.67 | 0.53249 |
Target: 5'- --cGCaGCAAGCCGCGA-CGCUa---- -3' miRNA: 3'- guaCG-CGUUCGGCGCUcGCGAcuuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 3610 | 0.73 | 0.225023 |
Target: 5'- -uUGCGcCAGGCCGCGcAGCGCuucggccgUGAAAa -3' miRNA: 3'- guACGC-GUUCGGCGC-UCGCG--------ACUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 11386 | 0.72 | 0.250862 |
Target: 5'- --aGCGCA-GCCG-GAGCGCUGGc-- -3' miRNA: 3'- guaCGCGUuCGGCgCUCGCGACUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 340 | 0.71 | 0.317879 |
Target: 5'- aGUGCGCGAGCCGuCGcauguGCGCggUGAGc- -3' miRNA: 3'- gUACGCGUUCGGC-GCu----CGCG--ACUUua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 14994 | 0.71 | 0.325275 |
Target: 5'- --cGCGCAGGCCGCaggcgugccgcccGAgcugaugcucGCGCUGAAGa -3' miRNA: 3'- guaCGCGUUCGGCG-------------CU----------CGCGACUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 1419 | 0.69 | 0.388044 |
Target: 5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3' miRNA: 3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 26712 | 0.69 | 0.407106 |
Target: 5'- --cGCGC-GGCCGCGGGCaGCUcGAc-- -3' miRNA: 3'- guaCGCGuUCGGCGCUCG-CGA-CUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 16001 | 0.68 | 0.446934 |
Target: 5'- --cGCGCAGacccGCCGCGAGcCGgUGAc-- -3' miRNA: 3'- guaCGCGUU----CGGCGCUC-GCgACUuua -5' |
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28079 | 5' | -55.1 | NC_005887.1 | + | 24954 | 0.67 | 0.499601 |
Target: 5'- --cGCGCGGGCCGCcuuGCGCg----- -3' miRNA: 3'- guaCGCGUUCGGCGcu-CGCGacuuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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