miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 164 0.67 0.543629
Target:  5'- aAUGCGaCGAGCCaGCGcGCGC-GAAu- -3'
miRNA:   3'- gUACGC-GUUCGG-CGCuCGCGaCUUua -5'
28079 5' -55.1 NC_005887.1 + 340 0.71 0.317879
Target:  5'- aGUGCGCGAGCCGuCGcauguGCGCggUGAGc- -3'
miRNA:   3'- gUACGCGUUCGGC-GCu----CGCG--ACUUua -5'
28079 5' -55.1 NC_005887.1 + 918 0.69 0.416855
Target:  5'- --aGCGCAuAGCCcaCGAgGCGCUGGAAg -3'
miRNA:   3'- guaCGCGU-UCGGc-GCU-CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 1080 0.67 0.510469
Target:  5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3'
miRNA:   3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 1419 0.69 0.388044
Target:  5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3'
miRNA:   3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 2483 0.68 0.488837
Target:  5'- gAUGCGCGAGgCGCucAGCGgUGAGc- -3'
miRNA:   3'- gUACGCGUUCgGCGc-UCGCgACUUua -5'
28079 5' -55.1 NC_005887.1 + 3205 0.74 0.190527
Target:  5'- --aGCGagaaGGGCCGCGAGCGCUcgcaGAAGa -3'
miRNA:   3'- guaCGCg---UUCGGCGCUCGCGA----CUUUa -5'
28079 5' -55.1 NC_005887.1 + 3610 0.73 0.225023
Target:  5'- -uUGCGcCAGGCCGCGcAGCGCuucggccgUGAAAa -3'
miRNA:   3'- guACGC-GUUCGGCGC-UCGCG--------ACUUUa -5'
28079 5' -55.1 NC_005887.1 + 4138 0.66 0.588852
Target:  5'- --cGCGCAAgGCUGCGcGCGaCUGGc-- -3'
miRNA:   3'- guaCGCGUU-CGGCGCuCGC-GACUuua -5'
28079 5' -55.1 NC_005887.1 + 4592 0.66 0.577463
Target:  5'- --gGCGCAGGCCGCGcAGaUGCa----- -3'
miRNA:   3'- guaCGCGUUCGGCGC-UC-GCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 5827 0.66 0.588852
Target:  5'- gUcgGCGCGGGUCGCGaAGgGC-GAAGc -3'
miRNA:   3'- -GuaCGCGUUCGGCGC-UCgCGaCUUUa -5'
28079 5' -55.1 NC_005887.1 + 6295 0.66 0.587711
Target:  5'- gCGUGCGCGAGCgcgucgaggccuUGCGccucgccGGCGCcGAGGUg -3'
miRNA:   3'- -GUACGCGUUCG------------GCGC-------UCGCGaCUUUA- -5'
28079 5' -55.1 NC_005887.1 + 7213 0.66 0.554843
Target:  5'- gCGUGCGCAGGCgcugucggCGuCGGGCGCa----- -3'
miRNA:   3'- -GUACGCGUUCG--------GC-GCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 8085 1.05 0.001114
Target:  5'- gCAUGCGCAAGCCGCGAGCGCUGAAAUc -3'
miRNA:   3'- -GUACGCGUUCGGCGCUCGCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 9753 0.66 0.611738
Target:  5'- uCGUGUGCGGGCUGCacguGCaCUGGAAc -3'
miRNA:   3'- -GUACGCGUUCGGCGcu--CGcGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 11386 0.72 0.250862
Target:  5'- --aGCGCA-GCCG-GAGCGCUGGc-- -3'
miRNA:   3'- guaCGCGUuCGGCgCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 11630 0.66 0.60028
Target:  5'- gCGUGCGCAAuGCCGagcuCGAcGCGUUGcAGAc -3'
miRNA:   3'- -GUACGCGUU-CGGC----GCU-CGCGAC-UUUa -5'
28079 5' -55.1 NC_005887.1 + 11867 0.69 0.425749
Target:  5'- gGUGCGCAacgcacgGGCCGCGucGCGCa----- -3'
miRNA:   3'- gUACGCGU-------UCGGCGCu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 12948 0.67 0.53249
Target:  5'- --cGCaGCAAGCCGCGA-CGCUa---- -3'
miRNA:   3'- guaCG-CGUUCGGCGCUcGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 14994 0.71 0.325275
Target:  5'- --cGCGCAGGCCGCaggcgugccgcccGAgcugaugcucGCGCUGAAGa -3'
miRNA:   3'- guaCGCGUUCGGCG-------------CU----------CGCGACUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.