miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 8085 1.05 0.001114
Target:  5'- gCAUGCGCAAGCCGCGAGCGCUGAAAUc -3'
miRNA:   3'- -GUACGCGUUCGGCGCUCGCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 16276 0.78 0.097944
Target:  5'- --cGCGCGGGCCGCuGAcGCGCUGAc-- -3'
miRNA:   3'- guaCGCGUUCGGCG-CU-CGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 3205 0.74 0.190527
Target:  5'- --aGCGagaaGGGCCGCGAGCGCUcgcaGAAGa -3'
miRNA:   3'- guaCGCg---UUCGGCGCUCGCGA----CUUUa -5'
28079 5' -55.1 NC_005887.1 + 3610 0.73 0.225023
Target:  5'- -uUGCGcCAGGCCGCGcAGCGCuucggccgUGAAAa -3'
miRNA:   3'- guACGC-GUUCGGCGC-UCGCG--------ACUUUa -5'
28079 5' -55.1 NC_005887.1 + 18410 0.73 0.237649
Target:  5'- gCGUGCGCAgacGGCCGCGAG-GCcGAc-- -3'
miRNA:   3'- -GUACGCGU---UCGGCGCUCgCGaCUuua -5'
28079 5' -55.1 NC_005887.1 + 24736 0.73 0.244181
Target:  5'- uCGUGCGCAGcguuuccaucuuGCgCGCGAGCGCgGGAu- -3'
miRNA:   3'- -GUACGCGUU------------CG-GCGCUCGCGaCUUua -5'
28079 5' -55.1 NC_005887.1 + 11386 0.72 0.250862
Target:  5'- --aGCGCA-GCCG-GAGCGCUGGc-- -3'
miRNA:   3'- guaCGCGUuCGGCgCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 340 0.71 0.317879
Target:  5'- aGUGCGCGAGCCGuCGcauguGCGCggUGAGc- -3'
miRNA:   3'- gUACGCGUUCGGC-GCu----CGCG--ACUUua -5'
28079 5' -55.1 NC_005887.1 + 14994 0.71 0.325275
Target:  5'- --cGCGCAGGCCGCaggcgugccgcccGAgcugaugcucGCGCUGAAGa -3'
miRNA:   3'- guaCGCGUUCGGCG-------------CU----------CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 1419 0.69 0.388044
Target:  5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3'
miRNA:   3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 26712 0.69 0.407106
Target:  5'- --cGCGC-GGCCGCGGGCaGCUcGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGCUCG-CGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 39993 0.69 0.416855
Target:  5'- --cGuCGUcGGCCuGCGAGCGCUGGu-- -3'
miRNA:   3'- guaC-GCGuUCGG-CGCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 918 0.69 0.416855
Target:  5'- --aGCGCAuAGCCcaCGAgGCGCUGGAAg -3'
miRNA:   3'- guaCGCGU-UCGGc-GCU-CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 11867 0.69 0.425749
Target:  5'- gGUGCGCAacgcacgGGCCGCGucGCGCa----- -3'
miRNA:   3'- gUACGCGU-------UCGGCGCu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 37550 0.69 0.426744
Target:  5'- -cUGCGCGAGauCCGCGAGCacggccucgccgGCUGGc-- -3'
miRNA:   3'- guACGCGUUC--GGCGCUCG------------CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 16001 0.68 0.446934
Target:  5'- --cGCGCAGacccGCCGCGAGcCGgUGAc-- -3'
miRNA:   3'- guaCGCGUU----CGGCGCUC-GCgACUuua -5'
28079 5' -55.1 NC_005887.1 + 2483 0.68 0.488837
Target:  5'- gAUGCGCGAGgCGCucAGCGgUGAGc- -3'
miRNA:   3'- gUACGCGUUCgGCGc-UCGCgACUUua -5'
28079 5' -55.1 NC_005887.1 + 24954 0.67 0.499601
Target:  5'- --cGCGCGGGCCGCcuuGCGCg----- -3'
miRNA:   3'- guaCGCGUUCGGCGcu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 27719 0.67 0.499601
Target:  5'- --cGCGCcggcuGCCGUGAGCGCg----- -3'
miRNA:   3'- guaCGCGuu---CGGCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 1080 0.67 0.510469
Target:  5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3'
miRNA:   3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.