miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 40138 0.66 0.60028
Target:  5'- gAUGCGCcAGCCGCccaucgguuuGCGCUGc--- -3'
miRNA:   3'- gUACGCGuUCGGCGcu--------CGCGACuuua -5'
28079 5' -55.1 NC_005887.1 + 39993 0.69 0.416855
Target:  5'- --cGuCGUcGGCCuGCGAGCGCUGGu-- -3'
miRNA:   3'- guaC-GCGuUCGG-CGCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 39346 0.67 0.543629
Target:  5'- --gGCGCuGGCCGCaGGCGCguUGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCG--ACUuua -5'
28079 5' -55.1 NC_005887.1 + 38230 0.66 0.599136
Target:  5'- -uUGCGCGuGGCCGggaugguCGAGCGCUcGAu-- -3'
miRNA:   3'- guACGCGU-UCGGC-------GCUCGCGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 37690 0.67 0.543629
Target:  5'- -cUGCGCAgcGGuCUGCGcGuCGCUGAGAUc -3'
miRNA:   3'- guACGCGU--UC-GGCGCuC-GCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 37550 0.69 0.426744
Target:  5'- -cUGCGCGAGauCCGCGAGCacggccucgccgGCUGGc-- -3'
miRNA:   3'- guACGCGUUC--GGCGCUCG------------CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 37008 0.67 0.548106
Target:  5'- --cGCGCAGGCCGUacgcgaacacgucggGAuacuggucgGCGCUGAGc- -3'
miRNA:   3'- guaCGCGUUCGGCG---------------CU---------CGCGACUUua -5'
28079 5' -55.1 NC_005887.1 + 30959 0.67 0.53249
Target:  5'- --gGCGCcGGCCGCcAGCGCUc---- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 30629 0.66 0.577463
Target:  5'- uCGUGCGC--GCCGUGcGCGCggcGAAGc -3'
miRNA:   3'- -GUACGCGuuCGGCGCuCGCGa--CUUUa -5'
28079 5' -55.1 NC_005887.1 + 27719 0.67 0.499601
Target:  5'- --cGCGCcggcuGCCGUGAGCGCg----- -3'
miRNA:   3'- guaCGCGuu---CGGCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 27653 0.66 0.60028
Target:  5'- uGUGCGCGcugagcuGCCGCGcGCGCg----- -3'
miRNA:   3'- gUACGCGUu------CGGCGCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 27474 0.66 0.611738
Target:  5'- --gGCGCAuucuGCCGCGcggugcGCGCUGuuGc -3'
miRNA:   3'- guaCGCGUu---CGGCGCu-----CGCGACuuUa -5'
28079 5' -55.1 NC_005887.1 + 27021 0.66 0.577463
Target:  5'- uGUGCGCAAccuCgGCGAGCGCg----- -3'
miRNA:   3'- gUACGCGUUc--GgCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 26712 0.69 0.407106
Target:  5'- --cGCGC-GGCCGCGGGCaGCUcGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGCUCG-CGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 24954 0.67 0.499601
Target:  5'- --cGCGCGGGCCGCcuuGCGCg----- -3'
miRNA:   3'- guaCGCGUUCGGCGcu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 24736 0.73 0.244181
Target:  5'- uCGUGCGCAGcguuuccaucuuGCgCGCGAGCGCgGGAu- -3'
miRNA:   3'- -GUACGCGUU------------CG-GCGCUCGCGaCUUua -5'
28079 5' -55.1 NC_005887.1 + 24615 0.66 0.611738
Target:  5'- --cGCGC-GGCCGUgccGAGCGUcuUGAAGa -3'
miRNA:   3'- guaCGCGuUCGGCG---CUCGCG--ACUUUa -5'
28079 5' -55.1 NC_005887.1 + 24429 0.67 0.543629
Target:  5'- uCGUGCGCAcgcaGGUCGCGAGCag-GAc-- -3'
miRNA:   3'- -GUACGCGU----UCGGCGCUCGcgaCUuua -5'
28079 5' -55.1 NC_005887.1 + 23960 0.67 0.543629
Target:  5'- --gGCGUAGGCCaucggguucGCGAGCGCcGGc-- -3'
miRNA:   3'- guaCGCGUUCGG---------CGCUCGCGaCUuua -5'
28079 5' -55.1 NC_005887.1 + 22977 0.66 0.611738
Target:  5'- -cUGCGCGAGCauggCGCGuuGCcGCUGAu-- -3'
miRNA:   3'- guACGCGUUCG----GCGCu-CG-CGACUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.