miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 37690 0.67 0.543629
Target:  5'- -cUGCGCAgcGGuCUGCGcGuCGCUGAGAUc -3'
miRNA:   3'- guACGCGU--UC-GGCGCuC-GCGACUUUA- -5'
28079 5' -55.1 NC_005887.1 + 39346 0.67 0.543629
Target:  5'- --gGCGCuGGCCGCaGGCGCguUGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCG--ACUuua -5'
28079 5' -55.1 NC_005887.1 + 24429 0.67 0.543629
Target:  5'- uCGUGCGCAcgcaGGUCGCGAGCag-GAc-- -3'
miRNA:   3'- -GUACGCGU----UCGGCGCUCGcgaCUuua -5'
28079 5' -55.1 NC_005887.1 + 17208 0.67 0.541395
Target:  5'- aAUGUGCucgacgaccugcAGCUGCG-GCGCUGGAu- -3'
miRNA:   3'- gUACGCGu-----------UCGGCGCuCGCGACUUua -5'
28079 5' -55.1 NC_005887.1 + 12948 0.67 0.53249
Target:  5'- --cGCaGCAAGCCGCGA-CGCUa---- -3'
miRNA:   3'- guaCG-CGUUCGGCGCUcGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 30959 0.67 0.53249
Target:  5'- --gGCGCcGGCCGCcAGCGCUc---- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCGAcuuua -5'
28079 5' -55.1 NC_005887.1 + 1080 0.67 0.510469
Target:  5'- cCGUGCGCAGGUCGaCG-GCGCc----- -3'
miRNA:   3'- -GUACGCGUUCGGC-GCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 24954 0.67 0.499601
Target:  5'- --cGCGCGGGCCGCcuuGCGCg----- -3'
miRNA:   3'- guaCGCGUUCGGCGcu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 27719 0.67 0.499601
Target:  5'- --cGCGCcggcuGCCGUGAGCGCg----- -3'
miRNA:   3'- guaCGCGuu---CGGCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 2483 0.68 0.488837
Target:  5'- gAUGCGCGAGgCGCucAGCGgUGAGc- -3'
miRNA:   3'- gUACGCGUUCgGCGc-UCGCgACUUua -5'
28079 5' -55.1 NC_005887.1 + 16001 0.68 0.446934
Target:  5'- --cGCGCAGacccGCCGCGAGcCGgUGAc-- -3'
miRNA:   3'- guaCGCGUU----CGGCGCUC-GCgACUuua -5'
28079 5' -55.1 NC_005887.1 + 37550 0.69 0.426744
Target:  5'- -cUGCGCGAGauCCGCGAGCacggccucgccgGCUGGc-- -3'
miRNA:   3'- guACGCGUUC--GGCGCUCG------------CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 11867 0.69 0.425749
Target:  5'- gGUGCGCAacgcacgGGCCGCGucGCGCa----- -3'
miRNA:   3'- gUACGCGU-------UCGGCGCu-CGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 918 0.69 0.416855
Target:  5'- --aGCGCAuAGCCcaCGAgGCGCUGGAAg -3'
miRNA:   3'- guaCGCGU-UCGGc-GCU-CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 39993 0.69 0.416855
Target:  5'- --cGuCGUcGGCCuGCGAGCGCUGGu-- -3'
miRNA:   3'- guaC-GCGuUCGG-CGCUCGCGACUuua -5'
28079 5' -55.1 NC_005887.1 + 26712 0.69 0.407106
Target:  5'- --cGCGC-GGCCGCGGGCaGCUcGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGCUCG-CGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 1419 0.69 0.388044
Target:  5'- --aGCgGCAAGacgaaCGCGAGCuGCUGGAAg -3'
miRNA:   3'- guaCG-CGUUCg----GCGCUCG-CGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 14994 0.71 0.325275
Target:  5'- --cGCGCAGGCCGCaggcgugccgcccGAgcugaugcucGCGCUGAAGa -3'
miRNA:   3'- guaCGCGUUCGGCG-------------CU----------CGCGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 340 0.71 0.317879
Target:  5'- aGUGCGCGAGCCGuCGcauguGCGCggUGAGc- -3'
miRNA:   3'- gUACGCGUUCGGC-GCu----CGCG--ACUUua -5'
28079 5' -55.1 NC_005887.1 + 11386 0.72 0.250862
Target:  5'- --aGCGCA-GCCG-GAGCGCUGGc-- -3'
miRNA:   3'- guaCGCGUuCGGCgCUCGCGACUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.