miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28080 3' -51.2 NC_005887.1 + 7546 1.1 0.001349
Target:  5'- gCGAUGCUCGAAAGCUUCCGCAGCAACu -3'
miRNA:   3'- -GCUACGAGCUUUCGAAGGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 984 0.79 0.188497
Target:  5'- aCGGucUGCUCGAAcGCUUCC-CGGCGGCg -3'
miRNA:   3'- -GCU--ACGAGCUUuCGAAGGcGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 21256 0.74 0.398012
Target:  5'- uCGAccCUCGggGGCa-CCGCGGCGGCg -3'
miRNA:   3'- -GCUacGAGCuuUCGaaGGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 7051 0.73 0.427742
Target:  5'- uGAUGaccuUCGAcGGCaUUCCGguGCAGCg -3'
miRNA:   3'- gCUACg---AGCUuUCG-AAGGCguCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 16941 0.73 0.458747
Target:  5'- gCGAUGCgUGAgcGCUUCaaccgCGCGGCGGCa -3'
miRNA:   3'- -GCUACGaGCUuuCGAAG-----GCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8562 0.72 0.512922
Target:  5'- gCGcAUGC-CGAAGGCagcaCCGCAGCAGg -3'
miRNA:   3'- -GC-UACGaGCUUUCGaa--GGCGUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 5374 0.71 0.52408
Target:  5'- cCGAcUGCUCGAAGGCgaagCCaGC-GCGACc -3'
miRNA:   3'- -GCU-ACGAGCUUUCGaa--GG-CGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14507 0.7 0.592657
Target:  5'- gCGGUGCUUGGugguccgcuugcAGGCgcggCCGuCGGCGGCg -3'
miRNA:   3'- -GCUACGAGCU------------UUCGaa--GGC-GUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 12368 0.7 0.627577
Target:  5'- aGAUGgacCUCGAcAGCaUCCGC-GCGGCg -3'
miRNA:   3'- gCUAC---GAGCUuUCGaAGGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 25937 0.69 0.639242
Target:  5'- uCGAU-CUCGGccgcguGAGCUUCCGgcCGGCGGCc -3'
miRNA:   3'- -GCUAcGAGCU------UUCGAAGGC--GUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14847 0.69 0.650899
Target:  5'- ---cGUUCGcgGGCgugcacaCCGCAGCAACa -3'
miRNA:   3'- gcuaCGAGCuuUCGaa-----GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 34799 0.69 0.650899
Target:  5'- uCGAguUGCUgCGGAAGCUUUCG-AGCAucGCg -3'
miRNA:   3'- -GCU--ACGA-GCUUUCGAAGGCgUCGU--UG- -5'
28080 3' -51.2 NC_005887.1 + 33439 0.69 0.674142
Target:  5'- aCGAUcCUCGAcGAGCUUCgCGUAGcCGAUg -3'
miRNA:   3'- -GCUAcGAGCU-UUCGAAG-GCGUC-GUUG- -5'
28080 3' -51.2 NC_005887.1 + 11112 0.68 0.697207
Target:  5'- uGGUGCgCGcGAAGCUggccgaggcgCCGUGGCGGCg -3'
miRNA:   3'- gCUACGaGC-UUUCGAa---------GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 5403 0.68 0.697207
Target:  5'- cCGGUGaacCGGcGGGCggcgCCGCAGCGACc -3'
miRNA:   3'- -GCUACga-GCU-UUCGaa--GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 40954 0.68 0.697207
Target:  5'- gCGcAUGCUCGAccGCUUCgGC-GCGGg -3'
miRNA:   3'- -GC-UACGAGCUuuCGAAGgCGuCGUUg -5'
28080 3' -51.2 NC_005887.1 + 19334 0.68 0.697207
Target:  5'- aGgcGCUCGAuAAGCUgaccaugcUCgCGCAGCAGa -3'
miRNA:   3'- gCuaCGAGCU-UUCGA--------AG-GCGUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 40906 0.68 0.701789
Target:  5'- aCGAgccGC-CGAAGGCUaCCGCgcgcgcaccgaguucGGCAACg -3'
miRNA:   3'- -GCUa--CGaGCUUUCGAaGGCG---------------UCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 31264 0.68 0.719988
Target:  5'- cCGAUGCgccacgCGGAAucGUUUgaGCAGCGGCg -3'
miRNA:   3'- -GCUACGa-----GCUUU--CGAAggCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 11308 0.68 0.731239
Target:  5'- gCGGccgGCUCGgcAGCgagcgCCGCAaccGCGACg -3'
miRNA:   3'- -GCUa--CGAGCuuUCGaa---GGCGU---CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.