miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28080 3' -51.2 NC_005887.1 + 984 0.79 0.188497
Target:  5'- aCGGucUGCUCGAAcGCUUCC-CGGCGGCg -3'
miRNA:   3'- -GCU--ACGAGCUUuCGAAGGcGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 5374 0.71 0.52408
Target:  5'- cCGAcUGCUCGAAGGCgaagCCaGC-GCGACc -3'
miRNA:   3'- -GCU-ACGAGCUUUCGaa--GG-CGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 5403 0.68 0.697207
Target:  5'- cCGGUGaacCGGcGGGCggcgCCGCAGCGACc -3'
miRNA:   3'- -GCUACga-GCU-UUCGaa--GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 5955 0.66 0.835391
Target:  5'- uCGAUaaGCUCGcuGGCgcgUCCgGCGauGCAGCa -3'
miRNA:   3'- -GCUA--CGAGCuuUCGa--AGG-CGU--CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 7011 0.66 0.844686
Target:  5'- uGAaGCUCGu-GGCcggCCGCcGCGGCg -3'
miRNA:   3'- gCUaCGAGCuuUCGaa-GGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 7051 0.73 0.427742
Target:  5'- uGAUGaccuUCGAcGGCaUUCCGguGCAGCg -3'
miRNA:   3'- gCUACg---AGCUuUCG-AAGGCguCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 7546 1.1 0.001349
Target:  5'- gCGAUGCUCGAAAGCUUCCGCAGCAACu -3'
miRNA:   3'- -GCUACGAGCUUUCGAAGGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8384 0.66 0.835391
Target:  5'- cCGGUGCU-GAcGGacgCCGCAcGCGACg -3'
miRNA:   3'- -GCUACGAgCUuUCgaaGGCGU-CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8418 0.67 0.785548
Target:  5'- cCGA-GCaCGAccAGGCUaucgCCGCAGCGAUc -3'
miRNA:   3'- -GCUaCGaGCU--UUCGAa---GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8562 0.72 0.512922
Target:  5'- gCGcAUGC-CGAAGGCagcaCCGCAGCAGg -3'
miRNA:   3'- -GC-UACGaGCUUUCGaa--GGCGUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 10674 0.67 0.785548
Target:  5'- aCGAU-CUCGAgcaacuGAGCUUCCGUAagccgucgaacGCGAUg -3'
miRNA:   3'- -GCUAcGAGCU------UUCGAAGGCGU-----------CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 11112 0.68 0.697207
Target:  5'- uGGUGCgCGcGAAGCUggccgaggcgCCGUGGCGGCg -3'
miRNA:   3'- gCUACGaGC-UUUCGAa---------GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 11308 0.68 0.731239
Target:  5'- gCGGccgGCUCGgcAGCgagcgCCGCAaccGCGACg -3'
miRNA:   3'- -GCUa--CGAGCuuUCGaa---GGCGU---CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 11866 0.67 0.753392
Target:  5'- uCGAcGCUCGgcGGuCUUUCGUcguucGGCAGCg -3'
miRNA:   3'- -GCUaCGAGCuuUC-GAAGGCG-----UCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 12368 0.7 0.627577
Target:  5'- aGAUGgacCUCGAcAGCaUCCGC-GCGGCg -3'
miRNA:   3'- gCUAC---GAGCUuUCGaAGGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 12741 0.67 0.774991
Target:  5'- ---cGCUCGAucGCg-CCGCGcuGCAACg -3'
miRNA:   3'- gcuaCGAGCUuuCGaaGGCGU--CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14507 0.7 0.592657
Target:  5'- gCGGUGCUUGGugguccgcuugcAGGCgcggCCGuCGGCGGCg -3'
miRNA:   3'- -GCUACGAGCU------------UUCGaa--GGC-GUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14678 0.66 0.844686
Target:  5'- uGAUGCagaCGAucAAGCcgcgCgCGCGGCAGCu -3'
miRNA:   3'- gCUACGa--GCU--UUCGaa--G-GCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 14847 0.69 0.650899
Target:  5'- ---cGUUCGcgGGCgugcacaCCGCAGCAACa -3'
miRNA:   3'- gcuaCGAGCuuUCGaa-----GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 16573 0.66 0.85373
Target:  5'- cCGAU-CUCGAccGGGC--CCGCAaGCAACu -3'
miRNA:   3'- -GCUAcGAGCU--UUCGaaGGCGU-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.