miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28081 3' -61.4 NC_005887.1 + 20877 0.66 0.3843
Target:  5'- gGCCUGaaugauaGUGGCGCCGGcgUgUCGAa -3'
miRNA:   3'- gCGGGCagg----CACCGCGGCCuaA-GGCU- -5'
28081 3' -61.4 NC_005887.1 + 8114 0.66 0.3843
Target:  5'- gCGCUCG-CCGaGGCGCCGcugUUCGGg -3'
miRNA:   3'- -GCGGGCaGGCaCCGCGGCcuaAGGCU- -5'
28081 3' -61.4 NC_005887.1 + 15497 0.66 0.375728
Target:  5'- cCGCgCGUCagaUGGaCGCCGGccaguUUCCGGa -3'
miRNA:   3'- -GCGgGCAGgc-ACC-GCGGCCu----AAGGCU- -5'
28081 3' -61.4 NC_005887.1 + 12850 0.66 0.358974
Target:  5'- gCGCCCG-CCGUcgaGGcCGCCGGcua-CGAc -3'
miRNA:   3'- -GCGGGCaGGCA---CC-GCGGCCuaagGCU- -5'
28081 3' -61.4 NC_005887.1 + 40875 0.66 0.358974
Target:  5'- aGCgCCGcacgCCGUcGGCGUCGGGcUCCu- -3'
miRNA:   3'- gCG-GGCa---GGCA-CCGCGGCCUaAGGcu -5'
28081 3' -61.4 NC_005887.1 + 10988 0.66 0.349984
Target:  5'- aCGCUCGUCgaggauggCGUGGUGCuCGGGUgcggcggUCUGGu -3'
miRNA:   3'- -GCGGGCAG--------GCACCGCG-GCCUA-------AGGCU- -5'
28081 3' -61.4 NC_005887.1 + 6991 0.67 0.335623
Target:  5'- gGCCCG--CGUGGUGCCGGGcgugaagcucguggCCGGc -3'
miRNA:   3'- gCGGGCagGCACCGCGGCCUaa------------GGCU- -5'
28081 3' -61.4 NC_005887.1 + 20701 0.67 0.319418
Target:  5'- aCGCCCGUCagauugGUcGGCGUCGGGUaUUCa- -3'
miRNA:   3'- -GCGGGCAGg-----CA-CCGCGGCCUA-AGGcu -5'
28081 3' -61.4 NC_005887.1 + 12210 0.7 0.215135
Target:  5'- gCGCCgCG-CCGgGcGCGCCGGAUUUCa- -3'
miRNA:   3'- -GCGG-GCaGGCaC-CGCGGCCUAAGGcu -5'
28081 3' -61.4 NC_005887.1 + 4618 0.71 0.179501
Target:  5'- uGCUCG-CCGcGGCGCCGGuggccgCCGGc -3'
miRNA:   3'- gCGGGCaGGCaCCGCGGCCuaa---GGCU- -5'
28081 3' -61.4 NC_005887.1 + 7213 1.08 0.000255
Target:  5'- cCGCCCGUCCGUGGCGCCGGAUUCCGAu -3'
miRNA:   3'- -GCGGGCAGGCACCGCGGCCUAAGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.