miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 18778 0.72 0.173627
Target:  5'- aGUCGcGUUCGCACUGC-CGGCCggCGAu -3'
miRNA:   3'- gCAGCuCGAGCGUGGCGaGUCGG--GCU- -5'
28084 3' -60.1 NC_005887.1 + 40714 0.69 0.243887
Target:  5'- -uUCGAcGCUCGUGCCGUccUCgAGCUCGAa -3'
miRNA:   3'- gcAGCU-CGAGCGUGGCG--AG-UCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 14146 0.67 0.328294
Target:  5'- cCGcCGAGacgCGCGgCGCUgaugcggcgcaCAGCCCGAu -3'
miRNA:   3'- -GCaGCUCga-GCGUgGCGA-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 38869 0.7 0.22005
Target:  5'- aCGUCGuGCUCGaucauCAgCGCgccaGGCCCGAa -3'
miRNA:   3'- -GCAGCuCGAGC-----GUgGCGag--UCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 6709 1.08 0.000278
Target:  5'- gCGUCGAGCUCGCACCGCUCAGCCCGAg -3'
miRNA:   3'- -GCAGCUCGAGCGUGGCGAGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 30721 0.71 0.185078
Target:  5'- gCGUCGAGCUCggcauuGCGCaCGCUCugcaccugcgugucgAGCgCCGAu -3'
miRNA:   3'- -GCAGCUCGAG------CGUG-GCGAG---------------UCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 1369 0.67 0.336228
Target:  5'- -uUCGAGCUCGgGCaCGUacaUCAGgCCCGc -3'
miRNA:   3'- gcAGCUCGAGCgUG-GCG---AGUC-GGGCu -5'
28084 3' -60.1 NC_005887.1 + 13934 0.67 0.352512
Target:  5'- --aCGAGCgccUGCGCgCGCUCGGCUgCGAc -3'
miRNA:   3'- gcaGCUCGa--GCGUG-GCGAGUCGG-GCU- -5'
28084 3' -60.1 NC_005887.1 + 6307 0.7 0.237733
Target:  5'- gCGUCGAGgcCUUGCGCCucGC-CGGCgCCGAg -3'
miRNA:   3'- -GCAGCUC--GAGCGUGG--CGaGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 8459 0.72 0.164572
Target:  5'- gCGaUCGAGCgcccggCGCaACCGCUCGGCgaCGAc -3'
miRNA:   3'- -GC-AGCUCGa-----GCG-UGGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 41226 0.66 0.386724
Target:  5'- cCGUgacCGAGCUcgacaagcacaCGCACCuGCUCGGCgUCGGc -3'
miRNA:   3'- -GCA---GCUCGA-----------GCGUGG-CGAGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 17435 0.69 0.25659
Target:  5'- -aUCGcGCUCGUcgAgCGCUaCGGCCCGAa -3'
miRNA:   3'- gcAGCuCGAGCG--UgGCGA-GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 10214 0.69 0.25659
Target:  5'- gCGUCGAuGCcCGCGCCGgaCGGCgCGu -3'
miRNA:   3'- -GCAGCU-CGaGCGUGGCgaGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 25007 0.69 0.243887
Target:  5'- gCGUC-AGCUCGCGCCGg-CGGCCg-- -3'
miRNA:   3'- -GCAGcUCGAGCGUGGCgaGUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 14478 0.67 0.344301
Target:  5'- uGUCGGGcCUCGCGCagaUCGuGCCCGc -3'
miRNA:   3'- gCAGCUC-GAGCGUGgcgAGU-CGGGCu -5'
28084 3' -60.1 NC_005887.1 + 17967 0.67 0.360861
Target:  5'- gCG-CGGGCUCGCcggcaucgGCCGCaccgacuggaaCAGCCUGAc -3'
miRNA:   3'- -GCaGCUCGAGCG--------UGGCGa----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 1386 0.67 0.360861
Target:  5'- gCGUCGcGCUCGUucaucaugggcCCGCUCGGCagCGGc -3'
miRNA:   3'- -GCAGCuCGAGCGu----------GGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 6639 0.67 0.369347
Target:  5'- -cUCGgcauGGCUCGUugUGUggGGCCCGAa -3'
miRNA:   3'- gcAGC----UCGAGCGugGCGagUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 17282 0.66 0.376233
Target:  5'- aCGUCGGGCg-GCGCCGCgcgcgcaaacgcCGGUUCGGc -3'
miRNA:   3'- -GCAGCUCGagCGUGGCGa-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 23937 0.66 0.3771
Target:  5'- aCGUCGGccucgcggcgucuGCgcaCGCACCGacgacCUCGGCCCa- -3'
miRNA:   3'- -GCAGCU-------------CGa--GCGUGGC-----GAGUCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.