miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 12950 0.68 0.312845
Target:  5'- uGUCGAGCcugaucgcgacCGCGCCGCaUGGgCCGAg -3'
miRNA:   3'- gCAGCUCGa----------GCGUGGCGaGUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 13432 0.77 0.073746
Target:  5'- aCGaCGAGCggCGCACCGCUCAGCaCGu -3'
miRNA:   3'- -GCaGCUCGa-GCGUGGCGAGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 13934 0.67 0.352512
Target:  5'- --aCGAGCgccUGCGCgCGCUCGGCUgCGAc -3'
miRNA:   3'- gcaGCUCGa--GCGUG-GCGAGUCGG-GCU- -5'
28084 3' -60.1 NC_005887.1 + 14146 0.67 0.328294
Target:  5'- cCGcCGAGacgCGCGgCGCUgaugcggcgcaCAGCCCGAu -3'
miRNA:   3'- -GCaGCUCga-GCGUgGCGA-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 14478 0.67 0.344301
Target:  5'- uGUCGGGcCUCGCGCagaUCGuGCCCGc -3'
miRNA:   3'- gCAGCUC-GAGCGUGgcgAGU-CGGGCu -5'
28084 3' -60.1 NC_005887.1 + 14690 0.69 0.263143
Target:  5'- aCGaUCGGGCUCGuCGCgGCgggCGGgCCGGg -3'
miRNA:   3'- -GC-AGCUCGAGC-GUGgCGa--GUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 15671 0.71 0.198229
Target:  5'- gCGcCGAGCUCGaccagcucacCGCCGCgCGGCCgGAu -3'
miRNA:   3'- -GCaGCUCGAGC----------GUGGCGaGUCGGgCU- -5'
28084 3' -60.1 NC_005887.1 + 16115 0.68 0.282213
Target:  5'- uCGUCGAGCggaucggacccgUGCGCCaGCUgCAGgCCGGc -3'
miRNA:   3'- -GCAGCUCGa-----------GCGUGG-CGA-GUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 16214 0.66 0.390264
Target:  5'- uCGUCGAGCgccgcgaaacgaagCGCGCCGUgCAggacauccuGCUCGAc -3'
miRNA:   3'- -GCAGCUCGa-------------GCGUGGCGaGU---------CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 16865 0.68 0.312845
Target:  5'- uCGUcCGAGCcgcCGCugCGUUguGCCCa- -3'
miRNA:   3'- -GCA-GCUCGa--GCGugGCGAguCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 17282 0.66 0.376233
Target:  5'- aCGUCGGGCg-GCGCCGCgcgcgcaaacgcCGGUUCGGc -3'
miRNA:   3'- -GCAGCUCGagCGUGGCGa-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 17435 0.69 0.25659
Target:  5'- -aUCGcGCUCGUcgAgCGCUaCGGCCCGAa -3'
miRNA:   3'- gcAGCuCGAGCG--UgGCGA-GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 17967 0.67 0.360861
Target:  5'- gCG-CGGGCUCGCcggcaucgGCCGCaccgacuggaaCAGCCUGAc -3'
miRNA:   3'- -GCaGCUCGAGCG--------UGGCGa----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 18778 0.72 0.173627
Target:  5'- aGUCGcGUUCGCACUGC-CGGCCggCGAu -3'
miRNA:   3'- gCAGCuCGAGCGUGGCGaGUCGG--GCU- -5'
28084 3' -60.1 NC_005887.1 + 20657 0.66 0.423053
Target:  5'- --aCGAgacGCUCGCACCGUuugCAGCugcccCCGAc -3'
miRNA:   3'- gcaGCU---CGAGCGUGGCGa--GUCG-----GGCU- -5'
28084 3' -60.1 NC_005887.1 + 23433 0.67 0.328294
Target:  5'- uCGUCGcAGC-CGCccgccaucccGCCGCUUccaccggaAGCCCGGc -3'
miRNA:   3'- -GCAGC-UCGaGCG----------UGGCGAG--------UCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 23915 0.7 0.208894
Target:  5'- gCGUCGAGaUCGCGCCGaUCAGCgUCGu -3'
miRNA:   3'- -GCAGCUCgAGCGUGGCgAGUCG-GGCu -5'
28084 3' -60.1 NC_005887.1 + 23937 0.66 0.3771
Target:  5'- aCGUCGGccucgcggcgucuGCgcaCGCACCGacgacCUCGGCCCa- -3'
miRNA:   3'- -GCAGCU-------------CGa--GCGUGGC-----GAGUCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 23977 0.68 0.3205
Target:  5'- uCG-CGAGCgccggCGCGCCGUcuacgcggaagUC-GCCCGAa -3'
miRNA:   3'- -GCaGCUCGa----GCGUGGCG-----------AGuCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 25007 0.69 0.243887
Target:  5'- gCGUC-AGCUCGCGCCGg-CGGCCg-- -3'
miRNA:   3'- -GCAGcUCGAGCGUGGCgaGUCGGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.