miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 535 0.68 0.305329
Target:  5'- gCGUCGGccGCcgCGCGCCGCgccggauaCAGCgCGAa -3'
miRNA:   3'- -GCAGCU--CGa-GCGUGGCGa-------GUCGgGCU- -5'
28084 3' -60.1 NC_005887.1 + 798 0.66 0.413779
Target:  5'- gCG-CGAGCUCGCgAUCGCgaucaaCAGCCa-- -3'
miRNA:   3'- -GCaGCUCGAGCG-UGGCGa-----GUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 1230 0.68 0.3205
Target:  5'- uGgCGGGCgcugCGCGgCGCUCAGCaCgCGAa -3'
miRNA:   3'- gCaGCUCGa---GCGUgGCGAGUCG-G-GCU- -5'
28084 3' -60.1 NC_005887.1 + 1312 0.69 0.250172
Target:  5'- -cUCGAGCUCgaccuGCACCGCgCGGCgCCa- -3'
miRNA:   3'- gcAGCUCGAG-----CGUGGCGaGUCG-GGcu -5'
28084 3' -60.1 NC_005887.1 + 1369 0.67 0.336228
Target:  5'- -uUCGAGCUCGgGCaCGUacaUCAGgCCCGc -3'
miRNA:   3'- gcAGCUCGAGCgUG-GCG---AGUC-GGGCu -5'
28084 3' -60.1 NC_005887.1 + 1386 0.67 0.360861
Target:  5'- gCGUCGcGCUCGUucaucaugggcCCGCUCGGCagCGGc -3'
miRNA:   3'- -GCAGCuCGAGCGu----------GGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 1489 0.66 0.413779
Target:  5'- gCGUgCGGcGCUCGCGCgGCgCGGCCg-- -3'
miRNA:   3'- -GCA-GCU-CGAGCGUGgCGaGUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 1547 0.69 0.26781
Target:  5'- uCGUCGAGCggcgcgUCGCcgccacgaaccucgACCGC-CGGCUCGGc -3'
miRNA:   3'- -GCAGCUCG------AGCG--------------UGGCGaGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 2053 0.69 0.25659
Target:  5'- uCGUCGAGCUCGaacgaAUCGagCGGCaCCGAc -3'
miRNA:   3'- -GCAGCUCGAGCg----UGGCgaGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 4242 0.71 0.1769
Target:  5'- gCGcCGAcGCUCgGCcgcacgcagucugaACUGCUCGGCCCGAu -3'
miRNA:   3'- -GCaGCU-CGAG-CG--------------UGGCGAGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 5116 0.66 0.403724
Target:  5'- aCGagGuGCUCGCcaagcucggcaugACCGCgCuGCCCGAc -3'
miRNA:   3'- -GCagCuCGAGCG-------------UGGCGaGuCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 6289 0.77 0.073746
Target:  5'- aCGUCG-GUUCGCACCGgUCuGCCCa- -3'
miRNA:   3'- -GCAGCuCGAGCGUGGCgAGuCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 6307 0.7 0.237733
Target:  5'- gCGUCGAGgcCUUGCGCCucGC-CGGCgCCGAg -3'
miRNA:   3'- -GCAGCUC--GAGCGUGG--CGaGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 6639 0.67 0.369347
Target:  5'- -cUCGgcauGGCUCGUugUGUggGGCCCGAa -3'
miRNA:   3'- gcAGC----UCGAGCGugGCGagUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 6709 1.08 0.000278
Target:  5'- gCGUCGAGCUCGCACCGCUCAGCCCGAg -3'
miRNA:   3'- -GCAGCUCGAGCGUGGCGAGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 8459 0.72 0.164572
Target:  5'- gCGaUCGAGCgcccggCGCaACCGCUCGGCgaCGAc -3'
miRNA:   3'- -GC-AGCUCGa-----GCG-UGGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 8923 0.67 0.369347
Target:  5'- uCGUCGAGgaUCGU-CUGCUCGGUCgCGGu -3'
miRNA:   3'- -GCAGCUCg-AGCGuGGCGAGUCGG-GCU- -5'
28084 3' -60.1 NC_005887.1 + 10214 0.69 0.25659
Target:  5'- gCGUCGAuGCcCGCGCCGgaCGGCgCGu -3'
miRNA:   3'- -GCAGCU-CGaGCGUGGCgaGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 10923 0.68 0.312845
Target:  5'- aCGUCG-GC-CgGC-CUGCUCAcGCCCGAu -3'
miRNA:   3'- -GCAGCuCGaG-CGuGGCGAGU-CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 11879 0.7 0.237733
Target:  5'- --aCGGGCcgcgucgCGCACCGCcuguucCAGCCCGGc -3'
miRNA:   3'- gcaGCUCGa------GCGUGGCGa-----GUCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.