miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 10923 0.68 0.312845
Target:  5'- aCGUCG-GC-CgGC-CUGCUCAcGCCCGAu -3'
miRNA:   3'- -GCAGCuCGaG-CGuGGCGAGU-CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 25007 0.69 0.243887
Target:  5'- gCGUC-AGCUCGCGCCGg-CGGCCg-- -3'
miRNA:   3'- -GCAGcUCGAGCGUGGCgaGUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 10214 0.69 0.25659
Target:  5'- gCGUCGAuGCcCGCGCCGgaCGGCgCGu -3'
miRNA:   3'- -GCAGCU-CGaGCGUGGCgaGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 17435 0.69 0.25659
Target:  5'- -aUCGcGCUCGUcgAgCGCUaCGGCCCGAa -3'
miRNA:   3'- gcAGCuCGAGCG--UgGCGA-GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 14690 0.69 0.263143
Target:  5'- aCGaUCGGGCUCGuCGCgGCgggCGGgCCGGg -3'
miRNA:   3'- -GC-AGCUCGAGC-GUGgCGa--GUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 32488 0.69 0.26781
Target:  5'- uCGUUGuAGUagGCACCGCUCAcaaaagcuccaucuGCUCGAa -3'
miRNA:   3'- -GCAGC-UCGagCGUGGCGAGU--------------CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 30488 0.68 0.290715
Target:  5'- gCGgccCGuGCguugCGCACCGCaaaacugcaUCAGCCCGc -3'
miRNA:   3'- -GCa--GCuCGa---GCGUGGCG---------AGUCGGGCu -5'
28084 3' -60.1 NC_005887.1 + 535 0.68 0.305329
Target:  5'- gCGUCGGccGCcgCGCGCCGCgccggauaCAGCgCGAa -3'
miRNA:   3'- -GCAGCU--CGa-GCGUGGCGa-------GUCGgGCU- -5'
28084 3' -60.1 NC_005887.1 + 25649 0.68 0.305329
Target:  5'- gGUUGAGCUU-CACCGC-CAGCCg-- -3'
miRNA:   3'- gCAGCUCGAGcGUGGCGaGUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 36987 0.7 0.23171
Target:  5'- gGUCGAGCUCGCcggcgaGCaCGCgCAGgCCGu -3'
miRNA:   3'- gCAGCUCGAGCG------UG-GCGaGUCgGGCu -5'
28084 3' -60.1 NC_005887.1 + 30367 0.71 0.203501
Target:  5'- uGcCGAGCUCgguGUACCGCUCGGCgucgCCGu -3'
miRNA:   3'- gCaGCUCGAG---CGUGGCGAGUCG----GGCu -5'
28084 3' -60.1 NC_005887.1 + 15671 0.71 0.198229
Target:  5'- gCGcCGAGCUCGaccagcucacCGCCGCgCGGCCgGAu -3'
miRNA:   3'- -GCaGCUCGAGC----------GUGGCGaGUCGGgCU- -5'
28084 3' -60.1 NC_005887.1 + 6289 0.77 0.073746
Target:  5'- aCGUCG-GUUCGCACCGgUCuGCCCa- -3'
miRNA:   3'- -GCAGCuCGAGCGUGGCgAGuCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 13432 0.77 0.073746
Target:  5'- aCGaCGAGCggCGCACCGCUCAGCaCGu -3'
miRNA:   3'- -GCaGCUCGa-GCGUGGCGAGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 40356 0.73 0.128884
Target:  5'- cCGUCGAGCgcggcCGUGCCGCUCGucgcGCgCGAg -3'
miRNA:   3'- -GCAGCUCGa----GCGUGGCGAGU----CGgGCU- -5'
28084 3' -60.1 NC_005887.1 + 28460 0.73 0.139906
Target:  5'- uCGUCG-GCUUGUugccggGCCGCuUCAGCUCGAc -3'
miRNA:   3'- -GCAGCuCGAGCG------UGGCG-AGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 28189 0.73 0.143767
Target:  5'- -aUCGGGCUgUGCGCCGCaUCAGCgCCGc -3'
miRNA:   3'- gcAGCUCGA-GCGUGGCG-AGUCG-GGCu -5'
28084 3' -60.1 NC_005887.1 + 8459 0.72 0.164572
Target:  5'- gCGaUCGAGCgcccggCGCaACCGCUCGGCgaCGAc -3'
miRNA:   3'- -GC-AGCUCGa-----GCG-UGGCGAGUCGg-GCU- -5'
28084 3' -60.1 NC_005887.1 + 4242 0.71 0.1769
Target:  5'- gCGcCGAcGCUCgGCcgcacgcagucugaACUGCUCGGCCCGAu -3'
miRNA:   3'- -GCaGCU-CGAG-CG--------------UGGCGAGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 31292 0.71 0.198229
Target:  5'- uCGUCGAGCUCG-ACCGgcaUCGGCgcaCCGGu -3'
miRNA:   3'- -GCAGCUCGAGCgUGGCg--AGUCG---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.