Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28084 | 3' | -60.1 | NC_005887.1 | + | 41564 | 0.68 | 0.281513 |
Target: 5'- uCG-CGAGCUCGCGCuCGUUuuuccacugauacgCGuGCCCGAu -3' miRNA: 3'- -GCaGCUCGAGCGUG-GCGA--------------GU-CGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 41226 | 0.66 | 0.386724 |
Target: 5'- cCGUgacCGAGCUcgacaagcacaCGCACCuGCUCGGCgUCGGc -3' miRNA: 3'- -GCA---GCUCGA-----------GCGUGG-CGAGUCG-GGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 40714 | 0.69 | 0.243887 |
Target: 5'- -uUCGAcGCUCGUGCCGUccUCgAGCUCGAa -3' miRNA: 3'- gcAGCU-CGAGCGUGGCG--AG-UCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 40356 | 0.73 | 0.128884 |
Target: 5'- cCGUCGAGCgcggcCGUGCCGCUCGucgcGCgCGAg -3' miRNA: 3'- -GCAGCUCGa----GCGUGGCGAGU----CGgGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 39643 | 0.69 | 0.276655 |
Target: 5'- uCGUCGcgcGGCUCG-GCCGCUUgccGCCCGu -3' miRNA: 3'- -GCAGC---UCGAGCgUGGCGAGu--CGGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 38869 | 0.7 | 0.22005 |
Target: 5'- aCGUCGuGCUCGaucauCAgCGCgccaGGCCCGAa -3' miRNA: 3'- -GCAGCuCGAGC-----GUgGCGag--UCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 38623 | 0.66 | 0.412858 |
Target: 5'- cCGUCcAGCUUGCGCggaucgcggucggCGCgCGGCUCGAc -3' miRNA: 3'- -GCAGcUCGAGCGUG-------------GCGaGUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 38069 | 0.68 | 0.283616 |
Target: 5'- uGUCGAcCUCGCGCgCGaucaUCGGgCCGAg -3' miRNA: 3'- gCAGCUcGAGCGUG-GCg---AGUCgGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 37861 | 0.67 | 0.352512 |
Target: 5'- aCGcgCGAuGCgCGCGCCGUUCGGCaCCu- -3' miRNA: 3'- -GCa-GCU-CGaGCGUGGCGAGUCG-GGcu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 36987 | 0.7 | 0.23171 |
Target: 5'- gGUCGAGCUCGCcggcgaGCaCGCgCAGgCCGu -3' miRNA: 3'- gCAGCUCGAGCG------UG-GCGaGUCgGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 36716 | 0.7 | 0.23171 |
Target: 5'- -uUCGAGCUCGCguaucgccuucACCGCgUC-GCCCGc -3' miRNA: 3'- gcAGCUCGAGCG-----------UGGCG-AGuCGGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 34460 | 0.77 | 0.071686 |
Target: 5'- aGUCGucuucGUUCGCGCgGCUCGcGCCCGAg -3' miRNA: 3'- gCAGCu----CGAGCGUGgCGAGU-CGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 32913 | 0.66 | 0.412858 |
Target: 5'- gGUCGuugguguAGCccgugauaGCACCGUUCcauAGCCCGAg -3' miRNA: 3'- gCAGC-------UCGag------CGUGGCGAG---UCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 32488 | 0.69 | 0.26781 |
Target: 5'- uCGUUGuAGUagGCACCGCUCAcaaaagcuccaucuGCUCGAa -3' miRNA: 3'- -GCAGC-UCGagCGUGGCGAGU--------------CGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 31292 | 0.71 | 0.198229 |
Target: 5'- uCGUCGAGCUCG-ACCGgcaUCGGCgcaCCGGu -3' miRNA: 3'- -GCAGCUCGAGCgUGGCg--AGUCG---GGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 30721 | 0.71 | 0.185078 |
Target: 5'- gCGUCGAGCUCggcauuGCGCaCGCUCugcaccugcgugucgAGCgCCGAu -3' miRNA: 3'- -GCAGCUCGAG------CGUG-GCGAG---------------UCG-GGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 30488 | 0.68 | 0.290715 |
Target: 5'- gCGgccCGuGCguugCGCACCGCaaaacugcaUCAGCCCGc -3' miRNA: 3'- -GCa--GCuCGa---GCGUGGCG---------AGUCGGGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 30367 | 0.71 | 0.203501 |
Target: 5'- uGcCGAGCUCgguGUACCGCUCGGCgucgCCGu -3' miRNA: 3'- gCaGCUCGAG---CGUGGCGAGUCG----GGCu -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 28460 | 0.73 | 0.139906 |
Target: 5'- uCGUCG-GCUUGUugccggGCCGCuUCAGCUCGAc -3' miRNA: 3'- -GCAGCuCGAGCG------UGGCG-AGUCGGGCU- -5' |
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28084 | 3' | -60.1 | NC_005887.1 | + | 28189 | 0.73 | 0.143767 |
Target: 5'- -aUCGGGCUgUGCGCCGCaUCAGCgCCGc -3' miRNA: 3'- gcAGCUCGA-GCGUGGCG-AGUCG-GGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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