miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28084 3' -60.1 NC_005887.1 + 14146 0.67 0.328294
Target:  5'- cCGcCGAGacgCGCGgCGCUgaugcggcgcaCAGCCCGAu -3'
miRNA:   3'- -GCaGCUCga-GCGUgGCGA-----------GUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 23433 0.67 0.328294
Target:  5'- uCGUCGcAGC-CGCccgccaucccGCCGCUUccaccggaAGCCCGGc -3'
miRNA:   3'- -GCAGC-UCGaGCG----------UGGCGAG--------UCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 23977 0.68 0.3205
Target:  5'- uCG-CGAGCgccggCGCGCCGUcuacgcggaagUC-GCCCGAa -3'
miRNA:   3'- -GCaGCUCGa----GCGUGGCG-----------AGuCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 1230 0.68 0.3205
Target:  5'- uGgCGGGCgcugCGCGgCGCUCAGCaCgCGAa -3'
miRNA:   3'- gCaGCUCGa---GCGUgGCGAGUCG-G-GCU- -5'
28084 3' -60.1 NC_005887.1 + 12950 0.68 0.312845
Target:  5'- uGUCGAGCcugaucgcgacCGCGCCGCaUGGgCCGAg -3'
miRNA:   3'- gCAGCUCGa----------GCGUGGCGaGUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 16865 0.68 0.312845
Target:  5'- uCGUcCGAGCcgcCGCugCGUUguGCCCa- -3'
miRNA:   3'- -GCA-GCUCGa--GCGugGCGAguCGGGcu -5'
28084 3' -60.1 NC_005887.1 + 10923 0.68 0.312845
Target:  5'- aCGUCG-GC-CgGC-CUGCUCAcGCCCGAu -3'
miRNA:   3'- -GCAGCuCGaG-CGuGGCGAGU-CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 25649 0.68 0.305329
Target:  5'- gGUUGAGCUU-CACCGC-CAGCCg-- -3'
miRNA:   3'- gCAGCUCGAGcGUGGCGaGUCGGgcu -5'
28084 3' -60.1 NC_005887.1 + 535 0.68 0.305329
Target:  5'- gCGUCGGccGCcgCGCGCCGCgccggauaCAGCgCGAa -3'
miRNA:   3'- -GCAGCU--CGa-GCGUGGCGa-------GUCGgGCU- -5'
28084 3' -60.1 NC_005887.1 + 30488 0.68 0.290715
Target:  5'- gCGgccCGuGCguugCGCACCGCaaaacugcaUCAGCCCGc -3'
miRNA:   3'- -GCa--GCuCGa---GCGUGGCG---------AGUCGGGCu -5'
28084 3' -60.1 NC_005887.1 + 38069 0.68 0.283616
Target:  5'- uGUCGAcCUCGCGCgCGaucaUCGGgCCGAg -3'
miRNA:   3'- gCAGCUcGAGCGUG-GCg---AGUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 16115 0.68 0.282213
Target:  5'- uCGUCGAGCggaucggacccgUGCGCCaGCUgCAGgCCGGc -3'
miRNA:   3'- -GCAGCUCGa-----------GCGUGG-CGA-GUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 41564 0.68 0.281513
Target:  5'- uCG-CGAGCUCGCGCuCGUUuuuccacugauacgCGuGCCCGAu -3'
miRNA:   3'- -GCaGCUCGAGCGUG-GCGA--------------GU-CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 39643 0.69 0.276655
Target:  5'- uCGUCGcgcGGCUCG-GCCGCUUgccGCCCGu -3'
miRNA:   3'- -GCAGC---UCGAGCgUGGCGAGu--CGGGCu -5'
28084 3' -60.1 NC_005887.1 + 32488 0.69 0.26781
Target:  5'- uCGUUGuAGUagGCACCGCUCAcaaaagcuccaucuGCUCGAa -3'
miRNA:   3'- -GCAGC-UCGagCGUGGCGAGU--------------CGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 1547 0.69 0.26781
Target:  5'- uCGUCGAGCggcgcgUCGCcgccacgaaccucgACCGC-CGGCUCGGc -3'
miRNA:   3'- -GCAGCUCG------AGCG--------------UGGCGaGUCGGGCU- -5'
28084 3' -60.1 NC_005887.1 + 14690 0.69 0.263143
Target:  5'- aCGaUCGGGCUCGuCGCgGCgggCGGgCCGGg -3'
miRNA:   3'- -GC-AGCUCGAGC-GUGgCGa--GUCgGGCU- -5'
28084 3' -60.1 NC_005887.1 + 2053 0.69 0.25659
Target:  5'- uCGUCGAGCUCGaacgaAUCGagCGGCaCCGAc -3'
miRNA:   3'- -GCAGCUCGAGCg----UGGCgaGUCG-GGCU- -5'
28084 3' -60.1 NC_005887.1 + 10214 0.69 0.25659
Target:  5'- gCGUCGAuGCcCGCGCCGgaCGGCgCGu -3'
miRNA:   3'- -GCAGCU-CGaGCGUGGCgaGUCGgGCu -5'
28084 3' -60.1 NC_005887.1 + 17435 0.69 0.25659
Target:  5'- -aUCGcGCUCGUcgAgCGCUaCGGCCCGAa -3'
miRNA:   3'- gcAGCuCGAGCG--UgGCGA-GUCGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.