miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 37406 0.67 0.574441
Target:  5'- uGCGCGGucgcgACuGCCUGCacgccaggugCGGAGUggagCGCGg -3'
miRNA:   3'- gCGUGCU-----UG-CGGACG----------GCCUUAa---GCGC- -5'
28088 5' -55.4 NC_005887.1 + 25893 0.67 0.560186
Target:  5'- cCGCuCGAACGCUUGCCGaucuucacgagcguGAGcuugccgUCGCGc -3'
miRNA:   3'- -GCGuGCUUGCGGACGGC--------------CUUa------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 10702 0.67 0.607618
Target:  5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3'
miRNA:   3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5'
28088 5' -55.4 NC_005887.1 + 37861 0.67 0.596525
Target:  5'- aCGCGCGAugcgcGCGCCguUCGGcaccUUCGCGg -3'
miRNA:   3'- -GCGUGCU-----UGCGGacGGCCuu--AAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 30755 0.67 0.607618
Target:  5'- gCGUGuCGAGCGCCgauCCGGuGUUCGgGu -3'
miRNA:   3'- -GCGU-GCUUGCGGac-GGCCuUAAGCgC- -5'
28088 5' -55.4 NC_005887.1 + 38779 0.67 0.574441
Target:  5'- uGCACGuGCGUCUugucgaucagGCCGGAAUuguucUCgGCGa -3'
miRNA:   3'- gCGUGCuUGCGGA----------CGGCCUUA-----AG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 39277 0.67 0.574441
Target:  5'- gGUcgGCGuucAGCGCCUGCaGGAucUUCGCGu -3'
miRNA:   3'- gCG--UGC---UUGCGGACGgCCUu-AAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 37445 0.67 0.563467
Target:  5'- gCGCACGAACaCCUcgcGCCGGcccUCgGCGa -3'
miRNA:   3'- -GCGUGCUUGcGGA---CGGCCuuaAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 26114 0.67 0.607618
Target:  5'- cCGUGCGcuCGCCgGCCGGcGUaucgaUCGUGa -3'
miRNA:   3'- -GCGUGCuuGCGGaCGGCCuUA-----AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 6402 0.68 0.53522
Target:  5'- gGCACGAGCgacugcgugaucaucGCCgugugGCCGGAcggcCGCGc -3'
miRNA:   3'- gCGUGCUUG---------------CGGa----CGGCCUuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 1422 0.68 0.541698
Target:  5'- gGCaagACGAACGCgagCUGCUGGAAggCGUu -3'
miRNA:   3'- gCG---UGCUUGCG---GACGGCCUUaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 4773 0.68 0.529843
Target:  5'- aGCGCGGgaagcugACGCCaGCCGGcGAggccgugcUCGCGg -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGCC-UUa-------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 30255 0.68 0.5096
Target:  5'- aCGUACaGGCGCUUGCCGuccggCGCGa -3'
miRNA:   3'- -GCGUGcUUGCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 12905 0.68 0.5096
Target:  5'- gGCACGGcgaGCCagcacGCCGGu-UUCGCGa -3'
miRNA:   3'- gCGUGCUug-CGGa----CGGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 24933 0.68 0.55255
Target:  5'- aGCGCGAuguucuuCGCCUGCCGccga-CGUGa -3'
miRNA:   3'- gCGUGCUu------GCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 501 0.68 0.551462
Target:  5'- gGCACGAgcaucagGCGCC-GCCaGA--UCGCGu -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGcCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 28369 0.68 0.499076
Target:  5'- aGCACGAACGCgUcGaCGGc-UUCGCGg -3'
miRNA:   3'- gCGUGCUUGCGgA-CgGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 9615 0.68 0.530917
Target:  5'- gCGCacGCGAGCGCCgcgcuaccccGCCGuGggUgaaccgCGCGg -3'
miRNA:   3'- -GCG--UGCUUGCGGa---------CGGC-CuuAa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 28454 0.68 0.541698
Target:  5'- uGcCACGAAUGCCgacgcgcacgaGCCGGuAGcUCGCGa -3'
miRNA:   3'- gC-GUGCUUGCGGa----------CGGCC-UUaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 29050 0.68 0.55255
Target:  5'- uGC-CGAACGCCUGgCCGaucuGGUUCaGCGc -3'
miRNA:   3'- gCGuGCUUGCGGAC-GGCc---UUAAG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.