miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 40773 0.7 0.437186
Target:  5'- cCGCGCGc-CGCCgaGCCGGcggucgaGGUUCGUGg -3'
miRNA:   3'- -GCGUGCuuGCGGa-CGGCC-------UUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1647 0.7 0.438165
Target:  5'- gGCACGAGCGUCgaaGCCGaAAUggucuucaUCGCGc -3'
miRNA:   3'- gCGUGCUUGCGGa--CGGCcUUA--------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 41287 0.69 0.448027
Target:  5'- gCGCACGGGCGCgCUGCUgccgccgggcaaGGAAcacCGCa -3'
miRNA:   3'- -GCGUGCUUGCG-GACGG------------CCUUaa-GCGc -5'
28088 5' -55.4 NC_005887.1 + 39802 0.69 0.458011
Target:  5'- gCGCGCGucgucacuuCGCaCUGCUGGAuaaagCGCGa -3'
miRNA:   3'- -GCGUGCuu-------GCG-GACGGCCUuaa--GCGC- -5'
28088 5' -55.4 NC_005887.1 + 26485 0.69 0.458011
Target:  5'- uGCugGuGCGCCUGCUGcg---CGCGg -3'
miRNA:   3'- gCGugCuUGCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1808 0.69 0.468112
Target:  5'- uGCGCGAGCGCCaGaCCGucg-UCGCu -3'
miRNA:   3'- gCGUGCUUGCGGaC-GGCcuuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 27360 0.69 0.478326
Target:  5'- gGCACGccuGCgGCCUGCgCGGccugCGCGg -3'
miRNA:   3'- gCGUGCu--UG-CGGACG-GCCuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 39982 0.69 0.488649
Target:  5'- aGgGCGAGaCGCCgugGCCcgacaugcaGGAcgUCGCGg -3'
miRNA:   3'- gCgUGCUU-GCGGa--CGG---------CCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 17182 0.69 0.488649
Target:  5'- gCGCGCGAACGCg-GCCGca---CGCGg -3'
miRNA:   3'- -GCGUGCUUGCGgaCGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 28369 0.68 0.499076
Target:  5'- aGCACGAACGCgUcGaCGGc-UUCGCGg -3'
miRNA:   3'- gCGUGCUUGCGgA-CgGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 12905 0.68 0.5096
Target:  5'- gGCACGGcgaGCCagcacGCCGGu-UUCGCGa -3'
miRNA:   3'- gCGUGCUug-CGGa----CGGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 30255 0.68 0.5096
Target:  5'- aCGUACaGGCGCUUGCCGuccggCGCGa -3'
miRNA:   3'- -GCGUGcUUGCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 35424 0.68 0.520216
Target:  5'- gGCGCGGcccAUGCCgaGUugCGGGAUUCGCu -3'
miRNA:   3'- gCGUGCU---UGCGGa-CG--GCCUUAAGCGc -5'
28088 5' -55.4 NC_005887.1 + 4773 0.68 0.529843
Target:  5'- aGCGCGGgaagcugACGCCaGCCGGcGAggccgugcUCGCGg -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGCC-UUa-------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 9615 0.68 0.530917
Target:  5'- gCGCacGCGAGCGCCgcgcuaccccGCCGuGggUgaaccgCGCGg -3'
miRNA:   3'- -GCG--UGCUUGCGGa---------CGGC-CuuAa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 6402 0.68 0.53522
Target:  5'- gGCACGAGCgacugcgugaucaucGCCgugugGCCGGAcggcCGCGc -3'
miRNA:   3'- gCGUGCUUG---------------CGGa----CGGCCUuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 1422 0.68 0.541698
Target:  5'- gGCaagACGAACGCgagCUGCUGGAAggCGUu -3'
miRNA:   3'- gCG---UGCUUGCG---GACGGCCUUaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 28454 0.68 0.541698
Target:  5'- uGcCACGAAUGCCgacgcgcacgaGCCGGuAGcUCGCGa -3'
miRNA:   3'- gC-GUGCUUGCGGa----------CGGCC-UUaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 501 0.68 0.551462
Target:  5'- gGCACGAgcaucagGCGCC-GCCaGA--UCGCGu -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGcCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 29050 0.68 0.55255
Target:  5'- uGC-CGAACGCCUGgCCGaucuGGUUCaGCGc -3'
miRNA:   3'- gCGuGCUUGCGGAC-GGCc---UUAAG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.