miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 5801 1.09 0.00072
Target:  5'- gCGCACGAACGCCUGCCGGAAUUCGCGa -3'
miRNA:   3'- -GCGUGCUUGCGGACGGCCUUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 36082 0.76 0.181252
Target:  5'- aCGUGCGGugGCCUGUCGGuaGAUugcccucgaUCGCGg -3'
miRNA:   3'- -GCGUGCUugCGGACGGCC--UUA---------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 13931 0.74 0.243414
Target:  5'- aGCACGAGCGCCUGCgCGcgcucggcugcGAcgUgCGCGu -3'
miRNA:   3'- gCGUGCUUGCGGACG-GC-----------CUuaA-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 40868 0.73 0.27008
Target:  5'- cCGCGCGAGCGCCgcacGCCGucGGcgUCGgGc -3'
miRNA:   3'- -GCGUGCUUGCGGa---CGGC--CUuaAGCgC- -5'
28088 5' -55.4 NC_005887.1 + 28983 0.72 0.298297
Target:  5'- aGCGCGAGCGCCaucGCCGGGcucuuuuccuuccAcugCGCGg -3'
miRNA:   3'- gCGUGCUUGCGGa--CGGCCU-------------Uaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 36974 0.72 0.298297
Target:  5'- gCGCugGcuuCGCCUucgagcaGUCGGAAUUUGCGg -3'
miRNA:   3'- -GCGugCuu-GCGGA-------CGGCCUUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 41354 0.72 0.29905
Target:  5'- gCGCGCGcACGgCgGCCGGcAAUUUGCGc -3'
miRNA:   3'- -GCGUGCuUGCgGaCGGCC-UUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 15497 0.72 0.305125
Target:  5'- cCGCGCGucagaugGACGCCgGCCaguuuccGGAcgUCGCGa -3'
miRNA:   3'- -GCGUGC-------UUGCGGaCGG-------CCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1696 0.72 0.322316
Target:  5'- aGCACGAGCGCaagCUGCgCGGcAugcagcucacGUUCGCGu -3'
miRNA:   3'- gCGUGCUUGCG---GACG-GCC-U----------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 35682 0.72 0.330367
Target:  5'- gCGCGCGAuCGgCgGCCGGc-UUCGCGg -3'
miRNA:   3'- -GCGUGCUuGCgGaCGGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 26835 0.72 0.338565
Target:  5'- uGCGCGAgcgggcGCGUCUGCCGGuagccgUUGCc -3'
miRNA:   3'- gCGUGCU------UGCGGACGGCCuua---AGCGc -5'
28088 5' -55.4 NC_005887.1 + 3888 0.71 0.372815
Target:  5'- gGCAUacGACGCCaUGCCGGAug-UGCGg -3'
miRNA:   3'- gCGUGc-UUGCGG-ACGGCCUuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 40009 0.7 0.390802
Target:  5'- gCGCugGu-CGCCcGCCGGA--UCGCc -3'
miRNA:   3'- -GCGugCuuGCGGaCGGCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 15609 0.7 0.398154
Target:  5'- gCGCACGGGCGUCgcgcagcaggcgGCCGGGc-UCGCc -3'
miRNA:   3'- -GCGUGCUUGCGGa-----------CGGCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 542 0.7 0.400006
Target:  5'- cCGC-CGcGCGCCgcGCCGGAuacagCGCGa -3'
miRNA:   3'- -GCGuGCuUGCGGa-CGGCCUuaa--GCGC- -5'
28088 5' -55.4 NC_005887.1 + 29757 0.7 0.400006
Target:  5'- aCGC-CGAGCGUCgcgGCCGGG--UCgGCGg -3'
miRNA:   3'- -GCGuGCUUGCGGa--CGGCCUuaAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 11374 0.7 0.418822
Target:  5'- aGCGCGGGCGUCagcgcaGCCGGAg--CGCu -3'
miRNA:   3'- gCGUGCUUGCGGa-----CGGCCUuaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 25043 0.7 0.418822
Target:  5'- aGCACGcgguGCGCCgaaCCGGcGUUUGCGc -3'
miRNA:   3'- gCGUGCu---UGCGGac-GGCCuUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 5586 0.7 0.428429
Target:  5'- aGCAUGAACGCCU-UUGGAAccugccgCGCGg -3'
miRNA:   3'- gCGUGCUUGCGGAcGGCCUUaa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 27202 0.7 0.428429
Target:  5'- uGCcguCGAGCGCCUGCaUGGggUcggUCGgGu -3'
miRNA:   3'- gCGu--GCUUGCGGACG-GCCuuA---AGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.